Kaitlyn R Loomas, Dale R Woerner, Ben M Bohrer, Tyson R Brown, Heather L Bruce, Marcio S Duarte, Bimol C Roy, Yifei Wang, Katie Pedgerachny, Jerrad F Legako
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No models could predict SSF tenderness category using FS and PCA-FS datasets with higher accuracy than the no information rate (NIR; 59.5 %, P ≥ 0.05). Population mean and standard deviation (SD) were calculated to generate 4 SD categories (±2) for further predictions. No model could predict SD category using the FS dataset (NIR = 55.1 %, P > 0.05). Top accuracies for PCA-FS were generated from the Treebag and Random Forest (RF) algorithms (82.8 % and 83.0 %, respectively; NIR = 55.0 %, P < 0.001). Top accuracies for FS were generated from SVM Radial and XGBoost to predict quality grade (84.6 % and 85.3 %, respectively NIR = 52.5 %, P < 0.001). Top accuracies for PCA-FS were generated from SVM Radial and RF (82.8 % and 84.2 %, respectively, P < 0.001). A stepwise regression model was built to evaluate relationships between SSF values and spectra generated from REIMS. Selected REIMS bins accounted for 7.2 % of the variation in predicted SSF values (R<sup>2</sup> = 0.072; P < 0.001). With more development, the RF algorithm could assist REIMS in rapid assessment of carcass quality.</p>","PeriodicalId":389,"journal":{"name":"Meat Science","volume":"222 ","pages":"109752"},"PeriodicalIF":7.1000,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Evaluation of rapid evaporative ionization mass spectrometry (REIMS) for the prediction of slice shear force and quality grades in beef longissimus lumborum steaks.\",\"authors\":\"Kaitlyn R Loomas, Dale R Woerner, Ben M Bohrer, Tyson R Brown, Heather L Bruce, Marcio S Duarte, Bimol C Roy, Yifei Wang, Katie Pedgerachny, Jerrad F Legako\",\"doi\":\"10.1016/j.meatsci.2025.109752\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Steak samples were collected from the longissimus lumborum muscles of beef carcasses (Canada AA, n = 1505; Canada AAA, n = 1363) over a 3-year period. 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引用次数: 0
摘要
牛排样本取自牛肉胴体腰最长肌(加拿大AA, n = 1505;加拿大AAA, n = 1363),为期3年。牛排陈化14 d,用切片剪切力(SSF)测定嫩度。采用快速蒸发电离质谱法(REIMS)对牛肉样品进行代谢组学分析(N = 2853)。13种机器学习算法被用来建立预测模型。使用两种不同的方法对数据进行简化,一种是特征选择(FS),第二种是主成分分析,其次是FS (PCA-FS)。使用FS和PCA-FS数据集预测SSF压痛类别的准确率均低于无信息率(NIR;59.5%, p≥0.05)。计算总体均值和标准差(SD),生成4个SD类别(±2),用于进一步预测。没有模型可以使用FS数据集预测SD类别(NIR = 55.1%, P < 0.05)。采用Treebag和Random Forest (RF)算法生成的PCA-FS精度最高,分别为82.8%和83.0%;Nir = 55.0%, p 2 = 0.072;P
Evaluation of rapid evaporative ionization mass spectrometry (REIMS) for the prediction of slice shear force and quality grades in beef longissimus lumborum steaks.
Steak samples were collected from the longissimus lumborum muscles of beef carcasses (Canada AA, n = 1505; Canada AAA, n = 1363) over a 3-year period. Steaks were aged for 14 d, and tenderness was determined by slice shear force (SSF). Metabolomic profiling of beef samples was performed using rapid evaporative ionization mass spectrometry (REIMS) (N = 2853). Thirteen machine learning algorithms were used to build predictive models. Data were reduced using two separate approaches, one being feature selection (FS) and the second principal component analysis followed by FS (PCA-FS). No models could predict SSF tenderness category using FS and PCA-FS datasets with higher accuracy than the no information rate (NIR; 59.5 %, P ≥ 0.05). Population mean and standard deviation (SD) were calculated to generate 4 SD categories (±2) for further predictions. No model could predict SD category using the FS dataset (NIR = 55.1 %, P > 0.05). Top accuracies for PCA-FS were generated from the Treebag and Random Forest (RF) algorithms (82.8 % and 83.0 %, respectively; NIR = 55.0 %, P < 0.001). Top accuracies for FS were generated from SVM Radial and XGBoost to predict quality grade (84.6 % and 85.3 %, respectively NIR = 52.5 %, P < 0.001). Top accuracies for PCA-FS were generated from SVM Radial and RF (82.8 % and 84.2 %, respectively, P < 0.001). A stepwise regression model was built to evaluate relationships between SSF values and spectra generated from REIMS. Selected REIMS bins accounted for 7.2 % of the variation in predicted SSF values (R2 = 0.072; P < 0.001). With more development, the RF algorithm could assist REIMS in rapid assessment of carcass quality.
期刊介绍:
The aim of Meat Science is to serve as a suitable platform for the dissemination of interdisciplinary and international knowledge on all factors influencing the properties of meat. While the journal primarily focuses on the flesh of mammals, contributions related to poultry will be considered if they enhance the overall understanding of the relationship between muscle nature and meat quality post mortem. Additionally, papers on large birds (e.g., emus, ostriches) as well as wild-captured mammals and crocodiles will be welcomed.