Fan Zhang, Haining Zhang, Zhi Li, Ru Meng, Peiling Ye, Yong Fu
{"title":"青藏高原藏羚羊泛皮癣的进化分析","authors":"Fan Zhang, Haining Zhang, Zhi Li, Ru Meng, Peiling Ye, Yong Fu","doi":"10.1007/s11686-024-00954-4","DOIUrl":null,"url":null,"abstract":"<div><h3>Purpose</h3><p><i>Hypoderma pantholopsum</i> is a parasite that parasitizes Tibetan antelopes (<i>Pantholops hodgsonii</i>). This study aims was to reveal the genetic diversity within <i>H. pantholopsum</i> and contribute to the protection of Tibetan antelope.</p><h3>Methods</h3><p><i>H. pantholopsum</i> was subjected to mitochondrial genome sequencing, annotation, and phylogenetic analysis. PhyloSuite and BEAST were used to construct phylogenetic tree and divergence time for the parasite.</p><h3>Results</h3><p>The complete <i>H. pantholopsum</i> genome was 16,265 bp in length. The complete mitochondrial genomes contained 37 typical genes, which included 13 protein-coding genes (PCGs), 22 tRNAs, and 2 rRNAs. Phylogenetic trees constructed based on the 18S rRNA, 28S rRNA, and mitochondrial genome sequences showed that <i>H. pantholopsum</i> clustered on the same branch as the <i>Hypoderma</i> species in the GenBank database. According to the divergence time for the COI gene, <i>H. pantholopsum</i> emerged and differentiated approximately 11.59 million years ago (Mya), which indicates that <i>H. pantholopsum</i> appeared much earlier than <i>H. bovis</i> and <i>H. sinense</i> in the genus <i>Hypoderma</i>.</p><h3>Conclusion</h3><p>The present study explored that the complete mitochondrial genome of <i>H. pantholopsum</i>, along with the phylogenetic evolution, and divergence time estimation, provide valuable data for future investigations into the phylogeny and differentiation of <i>Hypoderma</i> species on the Qinghai-Tibetan Plateau.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":6932,"journal":{"name":"Acta Parasitologica","volume":"70 1","pages":""},"PeriodicalIF":1.2000,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Evolutionary Analysis of Hypoderma Pantholopsum in Tibetan Antelopes on the Qinghai–Tibetan Plateau\",\"authors\":\"Fan Zhang, Haining Zhang, Zhi Li, Ru Meng, Peiling Ye, Yong Fu\",\"doi\":\"10.1007/s11686-024-00954-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Purpose</h3><p><i>Hypoderma pantholopsum</i> is a parasite that parasitizes Tibetan antelopes (<i>Pantholops hodgsonii</i>). This study aims was to reveal the genetic diversity within <i>H. pantholopsum</i> and contribute to the protection of Tibetan antelope.</p><h3>Methods</h3><p><i>H. pantholopsum</i> was subjected to mitochondrial genome sequencing, annotation, and phylogenetic analysis. PhyloSuite and BEAST were used to construct phylogenetic tree and divergence time for the parasite.</p><h3>Results</h3><p>The complete <i>H. pantholopsum</i> genome was 16,265 bp in length. The complete mitochondrial genomes contained 37 typical genes, which included 13 protein-coding genes (PCGs), 22 tRNAs, and 2 rRNAs. Phylogenetic trees constructed based on the 18S rRNA, 28S rRNA, and mitochondrial genome sequences showed that <i>H. pantholopsum</i> clustered on the same branch as the <i>Hypoderma</i> species in the GenBank database. According to the divergence time for the COI gene, <i>H. pantholopsum</i> emerged and differentiated approximately 11.59 million years ago (Mya), which indicates that <i>H. pantholopsum</i> appeared much earlier than <i>H. bovis</i> and <i>H. sinense</i> in the genus <i>Hypoderma</i>.</p><h3>Conclusion</h3><p>The present study explored that the complete mitochondrial genome of <i>H. pantholopsum</i>, along with the phylogenetic evolution, and divergence time estimation, provide valuable data for future investigations into the phylogeny and differentiation of <i>Hypoderma</i> species on the Qinghai-Tibetan Plateau.</p><h3>Graphical Abstract</h3><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>\",\"PeriodicalId\":6932,\"journal\":{\"name\":\"Acta Parasitologica\",\"volume\":\"70 1\",\"pages\":\"\"},\"PeriodicalIF\":1.2000,\"publicationDate\":\"2025-01-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta Parasitologica\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s11686-024-00954-4\",\"RegionNum\":3,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"PARASITOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta Parasitologica","FirstCategoryId":"3","ListUrlMain":"https://link.springer.com/article/10.1007/s11686-024-00954-4","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"PARASITOLOGY","Score":null,"Total":0}
Evolutionary Analysis of Hypoderma Pantholopsum in Tibetan Antelopes on the Qinghai–Tibetan Plateau
Purpose
Hypoderma pantholopsum is a parasite that parasitizes Tibetan antelopes (Pantholops hodgsonii). This study aims was to reveal the genetic diversity within H. pantholopsum and contribute to the protection of Tibetan antelope.
Methods
H. pantholopsum was subjected to mitochondrial genome sequencing, annotation, and phylogenetic analysis. PhyloSuite and BEAST were used to construct phylogenetic tree and divergence time for the parasite.
Results
The complete H. pantholopsum genome was 16,265 bp in length. The complete mitochondrial genomes contained 37 typical genes, which included 13 protein-coding genes (PCGs), 22 tRNAs, and 2 rRNAs. Phylogenetic trees constructed based on the 18S rRNA, 28S rRNA, and mitochondrial genome sequences showed that H. pantholopsum clustered on the same branch as the Hypoderma species in the GenBank database. According to the divergence time for the COI gene, H. pantholopsum emerged and differentiated approximately 11.59 million years ago (Mya), which indicates that H. pantholopsum appeared much earlier than H. bovis and H. sinense in the genus Hypoderma.
Conclusion
The present study explored that the complete mitochondrial genome of H. pantholopsum, along with the phylogenetic evolution, and divergence time estimation, provide valuable data for future investigations into the phylogeny and differentiation of Hypoderma species on the Qinghai-Tibetan Plateau.
期刊介绍：
Acta Parasitologica is an international journal covering the latest advances in the subject.
Acta Parasitologica publishes original papers on all aspects of parasitology and host-parasite relationships, including the latest discoveries in biochemical and molecular biology of parasites, their physiology, morphology, taxonomy and ecology, as well as original research papers on immunology, pathology, and epidemiology of parasitic diseases in the context of medical, veterinary and biological sciences. The journal also publishes short research notes, invited review articles, book reviews.
The journal was founded in 1953 as "Acta Parasitologica Polonica" by the Polish Parasitological Society and since 1954 has been published by W. Stefanski Institute of Parasitology of the Polish Academy of Sciences in Warsaw. Since 1992 in has appeared as Acta Parasitologica in four issues per year.
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