Jie Hao, Yan Yan, Yao Zhang, Yiyang Zhang, Yune Cao, Longguo Wu
{"title":"跨尺度迁移学习框架:从叶片微观结构到宏观高光谱成像的SOD活性预测","authors":"Jie Hao, Yan Yan, Yao Zhang, Yiyang Zhang, Yune Cao, Longguo Wu","doi":"10.1111/pbi.14566","DOIUrl":null,"url":null,"abstract":"Superoxide dismutase (SOD) plays an important role to respond in the defence against damage when tomato leaves are under different types of adversity stresses. This work employed microhyperspectral imaging (MHSI) and visible near-infrared (Vis–NIR) hyperspectral imaging (HSI) technologies to predict tomato leaf SOD activity. The macroscopic model of SOD activity in tomato leaves was constructed using the convolutional neural network in conjunction with the long and short-term temporal memory (CNN-LSTM) technique. Using heterogeneous two-dimensional correlation spectra (H2D-COS), the sensitive macroscopic and microscopic absorption peaks connected to tomato leaves' SOD activity were made clear. The combination of CNN-LSTM algorithm and H2D-COS analysis was used to research transfer learning between microscopic and macroscopic models based on sensitive wavelengths. The results demonstrated that the CNN-LSTM model, which was based on the FD preprocessed spectra, had the best performance for the microscopic model, with R<sub>C</sub> and R<sub>P</sub> reaching 0.9311 and 0.9075, and RMSEC and RMSEP reaching 0.0109 U/mg and 0.0127 U/mg respectively. There were 10 macroscopic and 10 microscopic significant sensitivity peaks found. The transfer learning was carried out using sensitive wavelengths, and the model performed well with an R<sub>P</sub> value of 0.7549 and an RMSEP of 0.0725 U/mg. The combined CNN algorithm and H2D-COS analysis demonstrated the viability of transfer learning across microscopic and macroscopic models for quantitative tomato leaf SOD prediction.","PeriodicalId":221,"journal":{"name":"Plant Biotechnology Journal","volume":"24 1","pages":""},"PeriodicalIF":10.1000,"publicationDate":"2025-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A cross-scale transfer learning framework: prediction of SOD activity from leaf microstructure to macroscopic hyperspectral imaging\",\"authors\":\"Jie Hao, Yan Yan, Yao Zhang, Yiyang Zhang, Yune Cao, Longguo Wu\",\"doi\":\"10.1111/pbi.14566\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Superoxide dismutase (SOD) plays an important role to respond in the defence against damage when tomato leaves are under different types of adversity stresses. This work employed microhyperspectral imaging (MHSI) and visible near-infrared (Vis–NIR) hyperspectral imaging (HSI) technologies to predict tomato leaf SOD activity. The macroscopic model of SOD activity in tomato leaves was constructed using the convolutional neural network in conjunction with the long and short-term temporal memory (CNN-LSTM) technique. Using heterogeneous two-dimensional correlation spectra (H2D-COS), the sensitive macroscopic and microscopic absorption peaks connected to tomato leaves' SOD activity were made clear. The combination of CNN-LSTM algorithm and H2D-COS analysis was used to research transfer learning between microscopic and macroscopic models based on sensitive wavelengths. The results demonstrated that the CNN-LSTM model, which was based on the FD preprocessed spectra, had the best performance for the microscopic model, with R<sub>C</sub> and R<sub>P</sub> reaching 0.9311 and 0.9075, and RMSEC and RMSEP reaching 0.0109 U/mg and 0.0127 U/mg respectively. There were 10 macroscopic and 10 microscopic significant sensitivity peaks found. The transfer learning was carried out using sensitive wavelengths, and the model performed well with an R<sub>P</sub> value of 0.7549 and an RMSEP of 0.0725 U/mg. The combined CNN algorithm and H2D-COS analysis demonstrated the viability of transfer learning across microscopic and macroscopic models for quantitative tomato leaf SOD prediction.\",\"PeriodicalId\":221,\"journal\":{\"name\":\"Plant Biotechnology Journal\",\"volume\":\"24 1\",\"pages\":\"\"},\"PeriodicalIF\":10.1000,\"publicationDate\":\"2025-01-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Biotechnology Journal\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1111/pbi.14566\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"BIOTECHNOLOGY & APPLIED MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Biotechnology Journal","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1111/pbi.14566","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"BIOTECHNOLOGY & APPLIED MICROBIOLOGY","Score":null,"Total":0}
A cross-scale transfer learning framework: prediction of SOD activity from leaf microstructure to macroscopic hyperspectral imaging
Superoxide dismutase (SOD) plays an important role to respond in the defence against damage when tomato leaves are under different types of adversity stresses. This work employed microhyperspectral imaging (MHSI) and visible near-infrared (Vis–NIR) hyperspectral imaging (HSI) technologies to predict tomato leaf SOD activity. The macroscopic model of SOD activity in tomato leaves was constructed using the convolutional neural network in conjunction with the long and short-term temporal memory (CNN-LSTM) technique. Using heterogeneous two-dimensional correlation spectra (H2D-COS), the sensitive macroscopic and microscopic absorption peaks connected to tomato leaves' SOD activity were made clear. The combination of CNN-LSTM algorithm and H2D-COS analysis was used to research transfer learning between microscopic and macroscopic models based on sensitive wavelengths. The results demonstrated that the CNN-LSTM model, which was based on the FD preprocessed spectra, had the best performance for the microscopic model, with RC and RP reaching 0.9311 and 0.9075, and RMSEC and RMSEP reaching 0.0109 U/mg and 0.0127 U/mg respectively. There were 10 macroscopic and 10 microscopic significant sensitivity peaks found. The transfer learning was carried out using sensitive wavelengths, and the model performed well with an RP value of 0.7549 and an RMSEP of 0.0725 U/mg. The combined CNN algorithm and H2D-COS analysis demonstrated the viability of transfer learning across microscopic and macroscopic models for quantitative tomato leaf SOD prediction.
期刊介绍:
Plant Biotechnology Journal aspires to publish original research and insightful reviews of high impact, authored by prominent researchers in applied plant science. The journal places a special emphasis on molecular plant sciences and their practical applications through plant biotechnology. Our goal is to establish a platform for showcasing significant advances in the field, encompassing curiosity-driven studies with potential applications, strategic research in plant biotechnology, scientific analysis of crucial issues for the beneficial utilization of plant sciences, and assessments of the performance of plant biotechnology products in practical applications.