PM6-ML:半经验量子化学和机器学习的协同作用转化为实用的计算方法。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-01-28 Epub Date: 2025-01-03 DOI:10.1021/acs.jctc.4c01330
Martin Nováček, Jan Řezáč
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引用次数: 0

摘要

机器学习(ML)方法为构建具有高精度和低计算成本的通用分子势提供了一条有前途的途径。越来越明显的是,将物理原理集成到这些模型中,或者在Δ-ML方案中使用它们,可以显著提高它们的鲁棒性和可移植性。本文介绍了PM6-ML,一种Δ-ML方法,它将半经验量子力学(SQM)方法PM6与最先进的ML潜力协同应用,作为通用校正。该方法比独立的SQM和ML方法表现出优越的性能,并且比其前身覆盖了更广泛的化学空间。它可以扩展到具有数千个原子的系统,这使得它适用于大型生物分子系统。广泛的基准测试证实了PM6-ML的准确性和稳健性。通过与MOPAC的直接接口,方便了其实际应用。代码和参数可在https://github.com/Honza-R/mopac-ml上获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

PM6-ML: The Synergy of Semiempirical Quantum Chemistry and Machine Learning Transformed into a Practical Computational Method.

PM6-ML: The Synergy of Semiempirical Quantum Chemistry and Machine Learning Transformed into a Practical Computational Method.

PM6-ML: The Synergy of Semiempirical Quantum Chemistry and Machine Learning Transformed into a Practical Computational Method.

PM6-ML: The Synergy of Semiempirical Quantum Chemistry and Machine Learning Transformed into a Practical Computational Method.

Machine learning (ML) methods offer a promising route to the construction of universal molecular potentials with high accuracy and low computational cost. It is becoming evident that integrating physical principles into these models, or utilizing them in a Δ-ML scheme, significantly enhances their robustness and transferability. This paper introduces PM6-ML, a Δ-ML method that synergizes the semiempirical quantum-mechanical (SQM) method PM6 with a state-of-the-art ML potential applied as a universal correction. The method demonstrates superior performance over standalone SQM and ML approaches and covers a broader chemical space than its predecessors. It is scalable to systems with thousands of atoms, which makes it applicable to large biomolecular systems. Extensive benchmarking confirms PM6-ML's accuracy and robustness. Its practical application is facilitated by a direct interface to MOPAC. The code and parameters are available at https://github.com/Honza-R/mopac-ml.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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