一种数据驱动的方法来建立细胞运动模式作为巨噬细胞亚型及其与细胞形态的关系的预测因子。

IF 2.6 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
PLoS ONE Pub Date : 2024-12-31 eCollection Date: 2024-01-01 DOI:10.1371/journal.pone.0315023
Manasa Kesapragada, Yao-Hui Sun, Kan Zhu, Cynthia Recendez, Daniel Fregoso, Hsin-Ya Yang, Marco Rolandi, Rivkah Isseroff, Min Zhao, Marcella Gomez
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引用次数: 0

摘要

巨噬细胞响应微环境刺激的运动性是先天免疫的一个标志,巨噬细胞在伤口愈合过程中发挥促炎或促修复作用,这取决于它们的激活状态。细胞大小和形状是确定巨噬细胞亚型的重要信息。研究表明,促炎性和抗炎性巨噬细胞在体外、3D和体内均表现出不同的迁移行为,但这种联系尚未得到严格的研究。我们应用形态学和基于运动的图像处理方法来分析由巨噬细胞表型组成的活细胞图像。巨噬细胞亚型是利用强效脂多糖(LPS)或细胞因子白介素-4 (IL-4)从原代小鼠骨髓来源的巨噬细胞中分化出来的。我们发现形态学与运动性密切相关,这导致了我们的假设,即运动性分析可以单独使用或与形态学特征结合使用,以改善巨噬细胞亚型的预测。我们训练了一个支持向量机(SVM)分类器来预测巨噬细胞亚型,分别基于形态学、运动性和形态学和运动性相结合。我们表明,运动性具有与形态学相当的预测能力。然而,使用这两种方法可以增强预测能力。虽然运动和形态特征可能是单独的模糊标识符,但它们一起提供了显著提高的预测精度(75%),从1000个细胞的训练数据集跟踪随着时间的推移,仅使用相对比延时显微镜。因此,结合细胞运动和细胞形态信息的方法可以快速有效地准确评估功能多样化的巨噬细胞表型。这可以支持开发高成本效益和高通量的方法来筛选靶向巨噬细胞极化的生化物质。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A data-driven approach to establishing cell motility patterns as predictors of macrophage subtypes and their relation to cell morphology.

The motility of macrophages in response to microenvironment stimuli is a hallmark of innate immunity, where macrophages play pro-inflammatory or pro-reparatory roles depending on their activation status during wound healing. Cell size and shape have been informative in defining macrophage subtypes. Studies show pro and anti-inflammatory macrophages exhibit distinct migratory behaviors, in vitro, in 3D and in vivo but this link has not been rigorously studied. We apply both morphology and motility-based image processing approaches to analyze live cell images consisting of macrophage phenotypes. Macrophage subtypes are differentiated from primary murine bone marrow derived macrophages using a potent lipopolysaccharide (LPS) or cytokine interleukin-4 (IL-4). We show that morphology is tightly linked to motility, which leads to our hypothesis that motility analysis could be used alone or in conjunction with morphological features for improved prediction of macrophage subtypes. We train a support vector machine (SVM) classifier to predict macrophage subtypes based on morphology alone, motility alone, and both morphology and motility combined. We show that motility has comparable predictive capabilities as morphology. However, using both measures can enhance predictive capabilities. While motility and morphological features can be individually ambiguous identifiers, together they provide significantly improved prediction accuracies (75%) from a training dataset of 1000 cells tracked over time using only phase contrast time-lapse microscopy. Thus, the approach combining cell motility and cell morphology information can lead to methods that accurately assess functionally diverse macrophage phenotypes quickly and efficiently. This can support the development of cost efficient and high through-put methods for screening biochemicals targeting macrophage polarization.

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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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