基于机器学习的QSAR模型在肺表面活性物质抑制剂分类中的评价。

Environment & Health Pub Date : 2024-09-20 eCollection Date: 2024-12-20 DOI:10.1021/envhealth.4c00118
James Y Liu, Joshua Peeples, Christie M Sayes
{"title":"基于机器学习的QSAR模型在肺表面活性物质抑制剂分类中的评价。","authors":"James Y Liu, Joshua Peeples, Christie M Sayes","doi":"10.1021/envhealth.4c00118","DOIUrl":null,"url":null,"abstract":"<p><p>Inhaled chemicals can cause dysfunction in the lung surfactant, a protein-lipid complex with critical biophysical and biochemical functions. This inhibition has many structure-related and dose-dependent mechanisms, making hazard identification challenging. We developed quantitative structure-activity relationships for predicting lung surfactant inhibition using machine learning. Logistic regression, support vector machines, random forest, gradient-boosted trees, prior-data-fitted networks, and multilayer perceptron were evaluated as methods. Multilayer perceptron had the strongest performance with 96% accuracy and an F1 score of 0.97. Support vector machines and logistic regression also performed well with lower computation costs. This serves as a proof-of-concept for efficient hazard screening in the emerging area of lung surfactant inhibition.</p>","PeriodicalId":29795,"journal":{"name":"Environment & Health","volume":"2 12","pages":"912-917"},"PeriodicalIF":0.0000,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11667287/pdf/","citationCount":"0","resultStr":"{\"title\":\"Evaluation of Machine Learning Based QSAR Models for the Classification of Lung Surfactant Inhibitors.\",\"authors\":\"James Y Liu, Joshua Peeples, Christie M Sayes\",\"doi\":\"10.1021/envhealth.4c00118\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Inhaled chemicals can cause dysfunction in the lung surfactant, a protein-lipid complex with critical biophysical and biochemical functions. This inhibition has many structure-related and dose-dependent mechanisms, making hazard identification challenging. We developed quantitative structure-activity relationships for predicting lung surfactant inhibition using machine learning. Logistic regression, support vector machines, random forest, gradient-boosted trees, prior-data-fitted networks, and multilayer perceptron were evaluated as methods. Multilayer perceptron had the strongest performance with 96% accuracy and an F1 score of 0.97. Support vector machines and logistic regression also performed well with lower computation costs. This serves as a proof-of-concept for efficient hazard screening in the emerging area of lung surfactant inhibition.</p>\",\"PeriodicalId\":29795,\"journal\":{\"name\":\"Environment & Health\",\"volume\":\"2 12\",\"pages\":\"912-917\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11667287/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Environment & Health\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1021/envhealth.4c00118\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/12/20 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Environment & Health","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1021/envhealth.4c00118","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/12/20 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

肺表面活性物质是一种具有重要生物物理和生物化学功能的蛋白质-脂质复合物。这种抑制作用有许多与结构相关和与剂量相关的机制,因此危害识别具有挑战性。我们开发了定量的结构-活性关系,利用机器学习预测肺表面活性物质的抑制作用。我们对逻辑回归、支持向量机、随机森林、梯度提升树、先验数据拟合网络和多层感知器等方法进行了评估。多层感知器的性能最强,准确率为 96%,F1 得分为 0.97。支持向量机和逻辑回归也表现出色,计算成本较低。这为肺表面活性物质抑制这一新兴领域的高效危害筛选提供了概念验证。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evaluation of Machine Learning Based QSAR Models for the Classification of Lung Surfactant Inhibitors.

Inhaled chemicals can cause dysfunction in the lung surfactant, a protein-lipid complex with critical biophysical and biochemical functions. This inhibition has many structure-related and dose-dependent mechanisms, making hazard identification challenging. We developed quantitative structure-activity relationships for predicting lung surfactant inhibition using machine learning. Logistic regression, support vector machines, random forest, gradient-boosted trees, prior-data-fitted networks, and multilayer perceptron were evaluated as methods. Multilayer perceptron had the strongest performance with 96% accuracy and an F1 score of 0.97. Support vector machines and logistic regression also performed well with lower computation costs. This serves as a proof-of-concept for efficient hazard screening in the emerging area of lung surfactant inhibition.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Environment & Health
Environment & Health 环境科学、健康科学-
自引率
0.00%
发文量
0
期刊介绍: Environment & Health a peer-reviewed open access journal is committed to exploring the relationship between the environment and human health.As a premier journal for multidisciplinary research Environment & Health reports the health consequences for individuals and communities of changing and hazardous environmental factors. In supporting the UN Sustainable Development Goals the journal aims to help formulate policies to create a healthier world.Topics of interest include but are not limited to:Air water and soil pollutionExposomicsEnvironmental epidemiologyInnovative analytical methodology and instrumentation (multi-omics non-target analysis effect-directed analysis high-throughput screening etc.)Environmental toxicology (endocrine disrupting effect neurotoxicity alternative toxicology computational toxicology epigenetic toxicology etc.)Environmental microbiology pathogen and environmental transmission mechanisms of diseasesEnvironmental modeling bioinformatics and artificial intelligenceEmerging contaminants (including plastics engineered nanomaterials etc.)Climate change and related health effectHealth impacts of energy evolution and carbon neutralizationFood and drinking water safetyOccupational exposure and medicineInnovations in environmental technologies for better healthPolicies and international relations concerned with environmental health
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信