日本丝蚕(Serangium japonicum Chapin, 1940)染色体水平的基因组组装。

IF 6.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Maolin Ye, Yonghui Xie, Jianfeng Jin, Chuyang Huang, Kaide Ning, Zhengling Liu, Hongming Li, Xingmin Wang
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引用次数: 0

摘要

日本丝蚕(鞘翅目;瓢虫科(Coccinellidae)作为一种掠食性瓢虫在生态系统中起着至关重要的作用,表现出对多种粉虱的捕食能力,并有效地调节其种群动态。然而,缺乏高质量的基因组数据阻碍了我们对这种掠食性甲虫的分子机制的理解。本研究利用PacBio HiFi长读数和Hi-C数据对日本血吸虫进行了基因组测序。基因组全长433.74 Mb,包含104个contigs和17个scaffold,其中contigs N50大小为11.44 Mb, scaffold N50大小为42.67 Mb。基因组的很大一部分,总计433.04 Mb(99.84%),锚定在10条染色体上。BUSCO分析显示基因组完整性为97.8% (n = 1,376),包括97.3%的单拷贝基因和0.5%的重复基因。基因组包含54.66% (237.06 Mb)的重复元件和12299个预测的蛋白质编码基因。日本瓢虫的染色体水平基因组提供了重要的基因组见解,增强了我们对瓢虫科进化和生态的理解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae).

A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae).

A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae).

A chromosome-level genome assembly of Serangium japonicum Chapin, 1940 (Coleoptera: Coccinellidae).

Serangium japonicum (Coleoptera; Coccinellidae) plays a crucial role as a predatory coccinellid in ecosystems, exhibiting adept predation on diverse whitefly species and effectively regulating their population dynamics. Nonetheless, the absence of high-quality genomic data has hindered our comprehension of the molecular mechanisms underlying this predatory beetle. This study performed genome sequencing of S. japonicum using the PacBio HiFi long reads and Hi-C data. The genome spans 433.74 Mb, which includes 104 contigs and 17 scaffolds, with a contig N50 size of 11.44 Mb and a scaffold N50 size of 42.67 Mb. A substantial portion of the genome, totaling 433.04 Mb (99.84%), was anchored to 10 chromosomes. BUSCO analysis demonstrates a high genomic completeness of 97.8% (n = 1,376), comprising 97.3% single-copy genes and 0.5% duplicated genes. The genome includes 54.66% (237.06 Mb) repetitive elements and 12,299 predicted protein-coding genes. The chromosome-level genome of S. japonicum offers important genomic insights that enhance our understanding of the evolution and ecology of the Coccinellidae family.

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来源期刊
Scientific Data
Scientific Data Social Sciences-Education
CiteScore
11.20
自引率
4.10%
发文量
689
审稿时长
16 weeks
期刊介绍: Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data. The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.
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