椎间盘退变坏死性下垂相关生物标志物和治疗靶点的生物信息学分析。

IF 2.6 3区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
BioMed Research International Pub Date : 2024-12-16 eCollection Date: 2024-01-01 DOI:10.1155/bmri/9922966
Fan Zhang, Lei Yuan, Heng Ding, Zhenkai Lou, Xingguo Li
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引用次数: 0

摘要

坏死性上睑下垂是椎间盘退变(IDD)的关键过程。本研究旨在发现IDD中坏死性下垂的关键调控基因,为早期诊断和治疗提供理论依据。IDD患者和正常样本的转录组数据来自Gene Expression Omnibus (GEO)公共数据库的GSE34095和GSE124272数据集。坏死相关基因(NRGs)来源于GeneCards数据库和文献。通过交叉这些来源鉴定了IDD中差异表达的坏死相关基因(DE-NRGs)。使用基因本体(GO)和京都基因与基因组百科全书(KEGG)进行基因注释分析。通过受试者工作特征(ROC)曲线和nomogram分析来评估DE-NRGs的诊断效率。miRWalk和starBase数据库帮助构建了DE-NRGs的竞争性内源性RNA (ceRNA)调控网络。我们在组织中发现了517个差异基因,在血液中发现了2974个差异基因,其中62个基因是共同的。DE-NRGs (AIFM1, CCT8, HNRNPA1, KHDRBS1, SERBP1)通过与这62个常见基因交叉鉴定。ROC曲线显示DE-NRG的曲线下面积(AUC)为0.70,nomogram显示DE-NRG评分越高,IDD风险越高。通过靶标药物预测,CCT8、KHDRBS1和AIFM1成为IDD的潜在治疗靶点。qRT-PCR(定量逆转录聚合酶链反应)、Western blot和免疫组化证实AIFM1、CCT8、HNRNPA1、KHDRBS1和SERBP1在患者髓核组织中表达,提示这些基因是IDD风险评估和药物治疗的关键靶点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bioinformatics Analysis of Biomarkers and Therapeutic Targets Related to Necroptosis in Intervertebral Disc Degeneration.

Necroptosis is a critical process in intervertebral disc degeneration (IDD). This research is aimed at identifying key genes regulating necroptosis in IDD to provide a theoretical basis for early diagnosis and treatment. Transcriptome data from patients with IDD and normal samples were obtained from the GSE34095 and GSE124272 datasets of the Gene Expression Omnibus (GEO) public database. Necroptosis-related genes (NRGs) were sourced from the GeneCards database and literature. Differentially expressed necroptosis-related genes (DE-NRGs) in IDD were identified by intersecting these sources. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used for gene annotation analysis. The receiver operating characteristic (ROC) curve and nomogram analyses assessed the diagnostic efficiency of DE-NRGs. The miRWalk and starBase databases helped construct the competing endogenous RNA (ceRNA) regulatory network of DE-NRGs. We identified 517 differential genes in tissue and 2974 in blood, with 62 genes in common. DE-NRGs (AIFM1, CCT8, HNRNPA1, KHDRBS1, SERBP1) were identified by intersecting NRGs with these 62 common genes. The ROC curve showed an area under the curve (AUC) > 0.70 for DE-NRGs, and the nomogram indicated that a higher DE-NRG score correlates with a higher risk of IDD. CCT8, KHDRBS1, and AIFM1 emerged as potential therapeutic targets for IDD through target drug prediction. qRT-PCR (quantitative reverse transcription polymerase chain reaction), Western blot, and immunohistochemistry confirmed the expression of AIFM1, CCT8, HNRNPA1, KHDRBS1, and SERBP1 in patients' nucleus pulposus tissue, suggesting these genes as key targets for IDD risk assessment and drug therapy.

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来源期刊
BioMed Research International
BioMed Research International BIOTECHNOLOGY & APPLIED MICROBIOLOGY-MEDICINE, RESEARCH & EXPERIMENTAL
CiteScore
6.70
自引率
0.00%
发文量
1942
审稿时长
19 weeks
期刊介绍: BioMed Research International is a peer-reviewed, Open Access journal that publishes original research articles, review articles, and clinical studies covering a wide range of subjects in life sciences and medicine. The journal is divided into 55 subject areas.
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