进化中不同光合反应中心的瞬态手性动力学。

IF 5.5 1区 化学 Q2 CHEMISTRY, PHYSICAL
Journal of Chemical Theory and Computation Pub Date : 2025-01-14 Epub Date: 2024-12-24 DOI:10.1021/acs.jctc.4c01469
Yonglei Yang, Zihui Liu, Fulu Zheng, Panpan Zhang, Hongxing He, Ajay Jha, Hong-Guang Duan
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引用次数: 0

摘要

光合反应中心(RCs)从无氧细菌到高阶含氧藻和植物的进化,凸显了其结构和功能多样化以适应环境条件的非凡历程。手性在这些中心的作用是重要的,影响光合作用中关键分子的排列和功能。研究手性的作用可以让我们对光合作用和地球上生命的进化史有更深入的了解。在这项研究中,我们利用二维电子能谱(2DES)研究了两种进化上不同的RCs中与手性相关的能量转移:一种来自无氧紫色硫细菌热嗜硫杆菌(BRC),另一种来自富氧蓝藻热嗜硫球菌(PSII RC)。通过使用圆偏振激光脉冲,我们可以提取这些rc中的瞬态手性动力学,详细了解它们对能量传递过程的手性贡献。我们还计算了传统的2DES,并将这些结果与圆二色性相关的光谱进行了比较。我们的研究结果表明,二维圆二色光谱有效地揭示了手性动力学,强调了色素的结构对称性及其与相关蛋白的相互作用。尽管具有相似的色素蛋白结构,BRC和PSII RC在超快时间尺度上表现出明显不同的手性动力学。在BRC中,BChM、BPhL、BCh和PM等色素对关键激子态的复杂贡献导致了更明显的手性特征和动态行为。相比之下,PSII RC虽然受到ChlD1和ChlD2的显著影响,但表现出较不复杂的手性效应和较弱的手性动力学。值得注意的是,与BRC相比,PSII RC显示出对局部激子种群的相干性衰减更快,这可能代表了氧光系统中最小化氧化应激的适应性机制。通过研究和比较BRC和PSII RC的手性激子相互作用和动力学,本研究为光合复合物的机制提供了有价值的见解。这些发现有助于理解光合蛋白在超快时间尺度上的功能优化与生物进化的关系。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Diverse Transient Chiral Dynamics in Evolutionary Distinct Photosynthetic Reaction Centers.

The evolution of photosynthetic reaction centers (RCs) from anoxygenic bacteria to higher-order oxygenic cynobacteria and plants highlights a remarkable journey of structural and functional diversification as an adaptation to environmental conditions. The role of chirality in these centers is important, influencing the arrangement and function of key molecules involved in photosynthesis. Investigating the role of chirality may provide a deeper understanding of photosynthesis and the evolutionary history of life on Earth. In this study, we explore chirality-related energy transfer in two evolutionarily distinct RCs: one from the anoxygenic purple sulfur bacterium Thermochromatium tepidum (BRC) and the other from the oxygenic cyanobacterium Thermosynechococcus vulcanus (PSII RC), utilizing two-dimensional electronic spectroscopy (2DES). By employing circularly polarized laser pulses, we can extract transient chiral dynamics within these RCs, offering a detailed view of their chiral contribution to energy transfer processes. We also compute traditional 2DES and compare these results with spectra related to circular dichroism. Our findings indicate that two-dimensional circular dichroism spectroscopy effectively reveals chiral dynamics, emphasizing the structural symmetries of pigments and their interactions with associated proteins. Despite having similar pigment-protein architectures, the BRC and PSII RC exhibit significantly different chiral dynamics on an ultrafast time scale. In the BRC, the complex contributions of pigments such as BChM, BPhL, BCh, and PM to key excitonic states lead to more pronounced chiral features and dynamic behavior. In contrast, the PSII RC, although significantly influenced by ChlD1 and ChlD2, shows less complex chiral effects and more subdued chiral dynamics. Notably, the PSII RC demonstrates a faster decay of coherence to localized excitonic populations compared to the BRC, which may represent an adaptive mechanism to minimize oxidative stress in oxygenic photosystems. By examining and comparing the chiral excitonic interactions and dynamics of BRC and PSII RC, this study offers valuable insights into the mechanisms of photosynthetic complexes. These findings could contribute to understanding how the functional optimization of photosynthetic proteins in ultrafast time scales is linked to biological evolution.

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来源期刊
Journal of Chemical Theory and Computation
Journal of Chemical Theory and Computation 化学-物理:原子、分子和化学物理
CiteScore
9.90
自引率
16.40%
发文量
568
审稿时长
1 months
期刊介绍: The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.
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