基于机器学习的QSAR模型在肺表面活性物质抑制剂分类中的评价

James Y. Liu, Joshua Peeples and Christie M. Sayes*, 
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引用次数: 0

摘要

吸入化学物质可导致肺表面活性剂功能障碍,这是一种具有关键生物物理和生化功能的蛋白质-脂质复合物。这种抑制有许多结构相关和剂量依赖的机制,使危险识别具有挑战性。我们利用机器学习建立了定量的构效关系来预测肺表面活性物质的抑制作用。评估了逻辑回归、支持向量机、随机森林、梯度增强树、先验数据拟合网络和多层感知器等方法。多层感知器表现最好,准确率为96%,F1得分为0.97。支持向量机和逻辑回归也具有较低的计算成本。这可以作为在肺表面活性物质抑制的新兴领域进行有效危害筛查的概念证明。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evaluation of Machine Learning Based QSAR Models for the Classification of Lung Surfactant Inhibitors

Inhaled chemicals can cause dysfunction in the lung surfactant, a protein–lipid complex with critical biophysical and biochemical functions. This inhibition has many structure-related and dose-dependent mechanisms, making hazard identification challenging. We developed quantitative structure–activity relationships for predicting lung surfactant inhibition using machine learning. Logistic regression, support vector machines, random forest, gradient-boosted trees, prior-data-fitted networks, and multilayer perceptron were evaluated as methods. Multilayer perceptron had the strongest performance with 96% accuracy and an F1 score of 0.97. Support vector machines and logistic regression also performed well with lower computation costs. This serves as a proof-of-concept for efficient hazard screening in the emerging area of lung surfactant inhibition.

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来源期刊
Environment & Health
Environment & Health 环境科学、健康科学-
自引率
0.00%
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0
期刊介绍: Environment & Health a peer-reviewed open access journal is committed to exploring the relationship between the environment and human health.As a premier journal for multidisciplinary research Environment & Health reports the health consequences for individuals and communities of changing and hazardous environmental factors. In supporting the UN Sustainable Development Goals the journal aims to help formulate policies to create a healthier world.Topics of interest include but are not limited to:Air water and soil pollutionExposomicsEnvironmental epidemiologyInnovative analytical methodology and instrumentation (multi-omics non-target analysis effect-directed analysis high-throughput screening etc.)Environmental toxicology (endocrine disrupting effect neurotoxicity alternative toxicology computational toxicology epigenetic toxicology etc.)Environmental microbiology pathogen and environmental transmission mechanisms of diseasesEnvironmental modeling bioinformatics and artificial intelligenceEmerging contaminants (including plastics engineered nanomaterials etc.)Climate change and related health effectHealth impacts of energy evolution and carbon neutralizationFood and drinking water safetyOccupational exposure and medicineInnovations in environmental technologies for better healthPolicies and international relations concerned with environmental health
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