韩国特有种双叶翘和连翘的染色体水平组合。

IF 6.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Hoyeol Jang, Ara Cho, Hyuk-Jin Kim, Haneul Kim, Seung-Hoon Jeong, Sun Mi Huh, Hee-Ju Yu, Dong-Kab Kim, Joo-Hwan Kim, Jeong-Hwan Mun
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引用次数: 0

摘要

二叠叶连翘(abelophyllum distichum)和连翘(Forsythia ovata)是韩国特有的近缘植物,是油科观赏灌木的重要品种。采用PacBio和Illumina测序结合Hi-C支架技术,开发了这些物种的染色体水平基因组组装。组合基因组大小分别为795.72 Mb和1108.53 Mb。该组合的骨架N50长度分别为53.12 Mb和68.97 Mb,最小间距分别为323.40 kb和149.00 kb,其BUSCO分数分别为97.71%和98.82%,具有较高的连续性和完整性。基因组重复序列分别为485.24 Mb和691.68 Mb,全长长末端重复反转录转座子分别为4926和7175个,蛋白质编码基因分别为49,414和57,587个。这14条假染色体分别占双歧拟南芥基因组的93.80%和卵形拟南芥基因组的89.11%,显示出一对一染色体水平的共线性。这些高质量的基因组组合为遗传和育种研究提供了宝贵的资源,有助于更深入地了解这些独特物种的进化史。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Chromosome-level assemblies of the endemic Korean species Abeliophyllum distichum and Forsythia ovata.

Chromosome-level assemblies of the endemic Korean species Abeliophyllum distichum and Forsythia ovata.

Chromosome-level assemblies of the endemic Korean species Abeliophyllum distichum and Forsythia ovata.

Abeliophyllum distichum and Forsythia ovata are closely related species endemic to Korea and are highly valued as ornamental shrubs in the Oleaceae family. A combination of PacBio and Illumina sequencing with Hi-C scaffolding technologies was employed to develop chromosome-level genome assemblies of these species. The assembled genome sizes are 795.72 Mb for A. distichum and 1,108.53 Mb for F. ovata. The assemblies exhibit scaffold N50 lengths of 53.12 Mb and 68.97 Mb, with minimal gaps measuring 323.40 kb and 149.00 kb, and 97.71% and 98.82% BUSCO scores for Embryophyta single-copy orthologs, respectively, indicating high contiguity and completeness. The genomes contain 485.24 Mb and 691.68 Mb of repetitive sequences, 4,926 and 7,175 full-length long terminal repeat retrotransposons, and 49,414 and 57,587 protein-coding genes, respectively. The 14 pseudochromosomes encompass 93.80% of the A. distichum genome and 89.11% of the F. ovata genome, thereby demonstrating one-to-one chromosome-level collinearity. These high-quality genome assemblies serve as invaluable resources for genetic and breeding studies, facilitating a deeper understanding of the evolutionary history of these distinctive species.

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来源期刊
Scientific Data
Scientific Data Social Sciences-Education
CiteScore
11.20
自引率
4.10%
发文量
689
审稿时长
16 weeks
期刊介绍: Scientific Data is an open-access journal focused on data, publishing descriptions of research datasets and articles on data sharing across natural sciences, medicine, engineering, and social sciences. Its goal is to enhance the sharing and reuse of scientific data, encourage broader data sharing, and acknowledge those who share their data. The journal primarily publishes Data Descriptors, which offer detailed descriptions of research datasets, including data collection methods and technical analyses validating data quality. These descriptors aim to facilitate data reuse rather than testing hypotheses or presenting new interpretations, methods, or in-depth analyses.
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