可逆自由连接链的弯曲弹性。

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL
Minsu Yi, Dongju Lee, Panayotis Benetatos
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引用次数: 0

摘要

具有可逆铰链的自由连接链模型(rFJC)是最简单的理论模型,它捕获了沿聚合物链主链的局部弯曲刚度的可逆转变(如螺旋盘式的局部构象变化或由于配体的结合/解结合而引起的变化)。在本工作中,我们分析了接枝rFJC在Gibbs(固定力)系综中的弯曲波动和弯曲响应。我们得到了接枝rFJC在弯曲力作用下配分函数的递推关系,原则上可以对任意尺寸rFJC的行为进行精确的数值计算。与拉伸相反,我们表明,在足够刚性的条件下,微分弯曲柔度和关闭铰链的平均分数是力的非单调函数。我们还获得rFJC的持续长度Lp和离散链的⟨R2⟩(均方端到端距离)和⟨z2⟩(均方横向挠度)的瞬间,并取连续体极限。切矢量自相关呈指数衰减,如在虫状链模型(WLC)中。值得注意的是,⟨R2⟩作为轮廓长度L的函数的表达式与WLC中的表达式相同。在热力学极限下,我们解析地计算了精确的弯曲响应。正如预期的那样,对于L ~ Lp,边界条件无关紧要,弯曲变成等价于拉伸。相反,对于Lp比L,我们已经证明了弯曲响应(闭合铰链的柔度和平均分数)的非单调性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bending elasticity of the reversible freely jointed chain.

The freely jointed chain model with reversible hinges (rFJC) is the simplest theoretical model, which captures reversible transitions of the local bending stiffness along the polymer chain backbone (e.g., helix-coil-type of local conformational changes or changes due to the binding/unbinding of ligands). In this work, we analyze the bending fluctuations and the bending response of a grafted rFJC in the Gibbs (fixed-force) ensemble. We obtain a recursion relation for the partition function of the grafted rFJC under a bending force, which allows, in principle, an exact-numerical calculation of the behavior of an rFJC of arbitrary size. In contrast to stretching, we show that under sufficiently stiff conditions, the differential bending compliance and the mean fraction of closed hinges are non-monotonic functions of the force. We also obtain the persistence length Lp of the rFJC and the moments ⟨R2⟩ (mean-square end-to-end distance) and ⟨z2⟩ (mean-square transverse deflection) for the discrete chain and take the continuum limit. The tangent vector auto-correlation decays exponentially, as in the wormlike chain model (WLC). Remarkably, the expression of ⟨R2⟩ as a function of the contour length L becomes the same as that in the WLC. In the thermodynamic limit, we have calculated the exact bending response analytically. As expected, for L ≫ Lp, the boundary conditions do not matter, and the bending becomes equivalent to stretching. In contrast, for Lp ≫ L, we have shown the non-monotonicity of the bending response (the compliance and mean fraction of closed hinges).

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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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