{"title":"从印度孙德尔本斯红树林分离出的链霉菌潜在新种的基因组描述。","authors":"Anwesha Ghosh, Simran Kaur Bhambra, Raghu Chandrasekaran, Punyasloke Bhadury","doi":"10.1099/acmi.0.000892.v5","DOIUrl":null,"url":null,"abstract":"<p><p>A potentially new species of <i>Streptomyces</i> was isolated from station 177 of the Sundarbans Seasonal Time Series in the Indian Sundarbans mangrove. The isolate was cultured from a sediment sample on TYS medium of salinity 15. Sequencing and annotation of the 16S rRNA showed 100% identity against <i>S. laurentii</i> NPS17 against GenBank/ENA/DDBJ. Annotation of the whole genome against the GTDB database showed closest identity with <i>S. terrae</i> SKN60 and belongs to the same clade as <i>S. roseicoloratus</i> TRM44457T and <i>S. laurentii</i> ATCC 31255. The genome is ~7.2 Mb and has a G+C% of 73%. The average amino acid identity was 85.01% with <i>S. roseicoloratus</i> and 80.34% with <i>S. roseolus</i>. The assembly reflected the presence of all essential genes and had 19 biosynthetic gene clusters predicted.</p>","PeriodicalId":94366,"journal":{"name":"Access microbiology","volume":"6 12","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11648730/pdf/","citationCount":"0","resultStr":"{\"title\":\"Genome description of a potentially new species of Streptomyces isolated from the Indian Sundarbans mangrove.\",\"authors\":\"Anwesha Ghosh, Simran Kaur Bhambra, Raghu Chandrasekaran, Punyasloke Bhadury\",\"doi\":\"10.1099/acmi.0.000892.v5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A potentially new species of <i>Streptomyces</i> was isolated from station 177 of the Sundarbans Seasonal Time Series in the Indian Sundarbans mangrove. The isolate was cultured from a sediment sample on TYS medium of salinity 15. Sequencing and annotation of the 16S rRNA showed 100% identity against <i>S. laurentii</i> NPS17 against GenBank/ENA/DDBJ. Annotation of the whole genome against the GTDB database showed closest identity with <i>S. terrae</i> SKN60 and belongs to the same clade as <i>S. roseicoloratus</i> TRM44457T and <i>S. laurentii</i> ATCC 31255. The genome is ~7.2 Mb and has a G+C% of 73%. The average amino acid identity was 85.01% with <i>S. roseicoloratus</i> and 80.34% with <i>S. roseolus</i>. The assembly reflected the presence of all essential genes and had 19 biosynthetic gene clusters predicted.</p>\",\"PeriodicalId\":94366,\"journal\":{\"name\":\"Access microbiology\",\"volume\":\"6 12\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-12-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11648730/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Access microbiology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1099/acmi.0.000892.v5\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Access microbiology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1099/acmi.0.000892.v5","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
Genome description of a potentially new species of Streptomyces isolated from the Indian Sundarbans mangrove.
A potentially new species of Streptomyces was isolated from station 177 of the Sundarbans Seasonal Time Series in the Indian Sundarbans mangrove. The isolate was cultured from a sediment sample on TYS medium of salinity 15. Sequencing and annotation of the 16S rRNA showed 100% identity against S. laurentii NPS17 against GenBank/ENA/DDBJ. Annotation of the whole genome against the GTDB database showed closest identity with S. terrae SKN60 and belongs to the same clade as S. roseicoloratus TRM44457T and S. laurentii ATCC 31255. The genome is ~7.2 Mb and has a G+C% of 73%. The average amino acid identity was 85.01% with S. roseicoloratus and 80.34% with S. roseolus. The assembly reflected the presence of all essential genes and had 19 biosynthetic gene clusters predicted.
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