通过转录组学和机器学习方法确定特应性皮炎和2型糖尿病的潜在共享机制。

IF 3.9 2区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES
Yang Zhang, Qiangman Wei, Qianzhi Chen
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引用次数: 0

摘要

虽然特应性皮炎(AD)和 2 型糖尿病(T2DM)在临床和病理生理学上似乎并不相关,但特应性皮炎是一种常见的皮肤病,其特点是慢性炎症和皮肤屏障功能障碍,而 2 型糖尿病是一种代谢性疾病,其特点是高血糖和慢性炎症,通过释放全身性炎症因子进一步加剧了胰岛素抵抗(IR)。尽管AD和T2DM存在明显的差异,但它们之间的分子机制却相对尚未被探索。在本研究中,我们利用差异基因表达分析(DEG)、基因组变异分析(GSVA)和机器学习算法整合了AD和T2DM的转录组数据,以发现这两种疾病的共同特征。我们发现了几个特征基因,包括 LTF、LTB4R 和 CCR1,它们在这两种疾病中都显著上调,可作为潜在的生物标志物。此外,虚拟筛选显示,薯蓣皂苷、喜树碱和阿霉素对 CCR1 结合位点有很强的亲和力,表明它们有可能成为候选治疗药物。总之,这项研究阐明了AD和T2DM的共同分子机制,并为诊断和治疗这些疾病提出了新的潜在靶点和药物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Potential shared mechanisms in atopic dermatitis and type 2 diabetes identified via transcriptomic and machine learning approaches.

Although atopic dermatitis (AD) and type 2 diabetes mellitus (T2DM) may appear clinically and pathophysiologically unrelated, AD is a common skin disease characterized by chronic inflammation and skin barrier dysfunction, whereas T2DM is a metabolic disorder marked by hyperglycemia and chronic inflammation, which further exacerbates insulin resistance (IR) through the release of systemic inflammatory factors. Despite their apparent differences, the molecular mechanisms shared between AD and T2DM remain relatively unexplored. In this study, we integrated transcriptomic data from both AD and T2DM using differential gene expression analyses (DEGs), gene set variation analysis (GSVA), and machine learning algorithms to uncover common features of these diseases. We identified several characteristic genes, including LTF, LTB4R, and CCR1, which are significantly upregulated in both conditions and may serve as potential biomarkers. Furthermore, virtual screening revealed that Dioscin, Camptothecin, and Albamycin exhibit strong affinity for the CCR1 binding site, indicating their potential as therapeutic candidates. In summary, this study elucidates the shared molecular mechanisms of AD and T2DM and introduces new potential targets and drugs for the diagnosis and treatment of these diseases.

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来源期刊
Scientific Reports
Scientific Reports Natural Science Disciplines-
CiteScore
7.50
自引率
4.30%
发文量
19567
审稿时长
3.9 months
期刊介绍: We publish original research from all areas of the natural sciences, psychology, medicine and engineering. You can learn more about what we publish by browsing our specific scientific subject areas below or explore Scientific Reports by browsing all articles and collections. Scientific Reports has a 2-year impact factor: 4.380 (2021), and is the 6th most-cited journal in the world, with more than 540,000 citations in 2020 (Clarivate Analytics, 2021). •Engineering Engineering covers all aspects of engineering, technology, and applied science. It plays a crucial role in the development of technologies to address some of the world''s biggest challenges, helping to save lives and improve the way we live. •Physical sciences Physical sciences are those academic disciplines that aim to uncover the underlying laws of nature — often written in the language of mathematics. It is a collective term for areas of study including astronomy, chemistry, materials science and physics. •Earth and environmental sciences Earth and environmental sciences cover all aspects of Earth and planetary science and broadly encompass solid Earth processes, surface and atmospheric dynamics, Earth system history, climate and climate change, marine and freshwater systems, and ecology. It also considers the interactions between humans and these systems. •Biological sciences Biological sciences encompass all the divisions of natural sciences examining various aspects of vital processes. The concept includes anatomy, physiology, cell biology, biochemistry and biophysics, and covers all organisms from microorganisms, animals to plants. •Health sciences The health sciences study health, disease and healthcare. This field of study aims to develop knowledge, interventions and technology for use in healthcare to improve the treatment of patients.
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