用于中药显微精准识别的分割-组合数据增强策略和双重关注机制。

IF 4.1 2区 生物学 Q1 PLANT SCIENCES
Frontiers in Plant Science Pub Date : 2024-11-29 eCollection Date: 2024-01-01 DOI:10.3389/fpls.2024.1442968
Xiaoying Zhu, Guangyao Pang, Xi He, Yue Chen, Zhenming Yu
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引用次数: 0

摘要

导言:中草药(CHM)历史悠久,在全球的认可度不断提高,但在显微鉴定自动化方面遇到了巨大挑战。这些挑战源于传统显微鉴定方法的局限性、可公开访问的数据集的稀缺性、不平衡的类别分布以及显微图像中特征较小、分布不均、不完整或模糊的问题:为了应对这些挑战,本研究提出了一种基于深度学习的中药显微鉴定(CHMMI)新方法。采用分割-组合数据增强策略来扩展和平衡数据集,从而捕捉全面的特征集。此外,浅-深双关注模块增强了模型关注不同层相关特征的能力。集成的多尺度推理可有效处理不同尺度的特征,从而提高物体检测和识别的准确性:CHMMI方法的平均精度(AP)为0.841,IoU=.50时的平均精度(mAP@.5)为0.887,IoU从.50到.95时的平均精度(mAP@.5:.95)为0.551,马修斯相关系数(Matthews Correlation Coefficient)为0.898。这些结果表明,与最先进的方法(包括 YOLOv5、SSD、Faster R-CNN 和 ResNet)相比,CHMMI 性能更优:所提出的 CHMMI 方法解决了传统方法的主要局限性,为 CHM 显微识别自动化提供了强大的解决方案。它的高精确度和有效的特征处理能力凸显了其现代化和支持 CHM 行业发展的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A segmentation-combination data augmentation strategy and dual attention mechanism for accurate Chinese herbal medicine microscopic identification.

Introduction: Chinese Herbal Medicine (CHM), with its deep-rooted history and increasing global recognition, encounters significant challenges in automation for microscopic identification. These challenges stem from limitations in traditional microscopic methods, scarcity of publicly accessible datasets, imbalanced class distributions, and issues with small, unevenly distributed, incomplete, or blurred features in microscopic images.

Methods: To address these challenges, this study proposes a novel deep learning-based approach for Chinese Herbal Medicine Microscopic Identification (CHMMI). A segmentation-combination data augmentation strategy is employed to expand and balance datasets, capturing comprehensive feature sets. Additionally, a shallow-deep dual attention module enhances the model's ability to focus on relevant features across different layers. Multi-scale inference is integrated to process features at various scales effectively, improving the accuracy of object detection and identification.

Results: The CHMMI approach achieved an Average Precision (AP) of 0.841, a mean Average Precision at IoU=.50 (mAP@.5) of 0.887, a mean Average Precision at IoU from .50 to .95 (mAP@.5:.95) of 0.551, and a Matthews Correlation Coefficient of 0.898. These results demonstrate superior performance compared to state-of-the-art methods, including YOLOv5, SSD, Faster R-CNN, and ResNet.

Discussion: The proposed CHMMI approach addresses key limitations of traditional methods, offering a robust solution for automating CHM microscopic identification. Its high accuracy and effective feature processing capabilities underscore its potential to modernize and support the growth of the CHM industry.

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来源期刊
Frontiers in Plant Science
Frontiers in Plant Science PLANT SCIENCES-
CiteScore
7.30
自引率
14.30%
发文量
4844
审稿时长
14 weeks
期刊介绍: In an ever changing world, plant science is of the utmost importance for securing the future well-being of humankind. Plants provide oxygen, food, feed, fibers, and building materials. In addition, they are a diverse source of industrial and pharmaceutical chemicals. Plants are centrally important to the health of ecosystems, and their understanding is critical for learning how to manage and maintain a sustainable biosphere. Plant science is extremely interdisciplinary, reaching from agricultural science to paleobotany, and molecular physiology to ecology. It uses the latest developments in computer science, optics, molecular biology and genomics to address challenges in model systems, agricultural crops, and ecosystems. Plant science research inquires into the form, function, development, diversity, reproduction, evolution and uses of both higher and lower plants and their interactions with other organisms throughout the biosphere. Frontiers in Plant Science welcomes outstanding contributions in any field of plant science from basic to applied research, from organismal to molecular studies, from single plant analysis to studies of populations and whole ecosystems, and from molecular to biophysical to computational approaches. Frontiers in Plant Science publishes articles on the most outstanding discoveries across a wide research spectrum of Plant Science. The mission of Frontiers in Plant Science is to bring all relevant Plant Science areas together on a single platform.
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