Marcos Soares Barbeitos, Flávio Alberto Pérez, Julián Olaya-Restrepo, Ana Paula Martins Winter, João Batista Florindo, Estevão Esmi Laureano
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引用次数: 0
摘要
即使经过250多年的分类,硬珊瑚的物种划分仍然存在争议。在核菌属中令人困惑的分类并不是草率工作的结果:由于大多数诊断特征都是定量的,并且受到相当大的形态可塑性的影响,因此很难划定明确的界限。在这项研究中,我们认为分类学家实际上可能能够在形态物种之间进行视觉区分,但无法将他们的视觉感知转化为准确的物种描述。在本文中,我们引入了基于计算机视觉的形态特征自动量化方法(complete Local Binary Patterns-CLBP),并测试了其在问题属Siderastrea上的有效性。采用模糊逻辑人工神经网络(Θ-FAM),本质上是为了处理软和微妙的决策边界,用于将先验的物种识别不确定性因素纳入监督分类过程。机器学习统计表明,使用CLBP和Θ-FAM的自动物种识别优于传统形态计量特征和Θ-FAM的组合,也优于CLBP+LDA(线性判别分析)。这些结果表明,人类的辨别能力可以通过计算机视觉和人工智能的结合来模拟,这是一个潜在的有价值的工具,可以克服最终用户在硬珊瑚上工作的分类障碍。
AI-based coral species discrimination: A case study of the Siderastrea Atlantic Complex.
Species delimitation in hard corals remains controversial even after 250+ years of taxonomy. Confusing taxonomy in Scleractinia is not the result of sloppy work: clear boundaries are hard to draw because most diagnostic characters are quantitative and subjected to considerable morphological plasticity. In this study, we argue that taxonomists may actually be able to visually discriminate among morphospecies, but fail to translate their visual perception into accurate species descriptions. In this article, we introduce automated quantification of morphological traits using computer vision (Completed Local Binary Patterns-CLBP) and test its efficiency on the problematic genus Siderastrea. An artificial neural network employing fuzzy logic (Θ-FAM), intrinsically formulated to deal with soft and subtle decision boundaries, was used to factor a priori species identification uncertainty into the supervised classification procedure. Machine learning statistics demonstrate that automated species identification using CLBP and Θ-FAM outperformed the combination of traditional morphometric characters and Θ-FAM, and was also superior to CLBP+LDA (Linear Discriminant Analysis). These results suggest that human discrimination ability can be emulated by the association of computer vision and artificial intelligence, a potentially valuable tool to overcome taxonomic impediment to end users working on hard corals.
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