{"title":"3-甲氧基木犀草素的抗氧化潜能:密度泛函理论(DFT)、分子对接与动力学——实验与计算相结合的研究。","authors":"Vu Minh Trang, Nguyen Xuan Ha, Ninh The Son","doi":"10.1002/cbdv.202402993","DOIUrl":null,"url":null,"abstract":"<div>\n \n <p>The current study first describes the antioxidative potential of 3-methoxyluteolin. The experimental result is supported by computational approaches. The studied flavone (IC<sub>50</sub> 12.40 µg/mL) was comparable to ascorbic acid in antioxidative activity against 2,2-diphenyl-1-picrylhydrazyl (DPPH) radicals (IC<sub>50</sub> 11.38 µg/mL). From DFT (density functional theory) calculations, its principal radical mechanism in gas and lipid was the FHT (formal hydrogen transfer), whereas the SPL-ET (sequential proton loss-electron transfer) was the main way in water. Hydroxyl groups were crucial radical scavenging sites, especially at carbon C-4′. Kinetic evidence indicated that the reactions between the studied compound with HOO˙ radicals resulted in the <i>k</i><sub>overall</sub> (overall rate constant) of 2.5 × 10<sup>9</sup> and 1.07 × 10<sup>3</sup> (M s)<sup>−1</sup> in water and pentyl ethanoate, respectively. The studied molecule also chelated to Zn metal ion to form Zn(3-methoxyluteolin)<sub>2</sub> complex with the lowest binding energy value of −322.911 kcal/mol. Considering the neurodegenerative inhibitory potentials of the studied compound, molecular docking results revealed that 3-methoxyluteolin interacted with the active sites of both acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) with the binding affinities of −9.493 and −8.812 kcal/mol, respectively, which are stronger than the reference compound tacrine. To assess the structural stability and binding interactions with each studied protein, molecular dynamics simulations were conducted. The results indicated that the 3-methoxyluteolin complexes with AChE and BChE remained stable during a simulation period.</p>\n </div>","PeriodicalId":9878,"journal":{"name":"Chemistry & Biodiversity","volume":"22 5","pages":""},"PeriodicalIF":2.5000,"publicationDate":"2024-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Antioxidative Potential of 3-Methoxyluteolin: Density Functional Theory (DFT), Molecular Docking, and Dynamics—A Combined Experimental and Computational Study\",\"authors\":\"Vu Minh Trang, Nguyen Xuan Ha, Ninh The Son\",\"doi\":\"10.1002/cbdv.202402993\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div>\\n \\n <p>The current study first describes the antioxidative potential of 3-methoxyluteolin. The experimental result is supported by computational approaches. The studied flavone (IC<sub>50</sub> 12.40 µg/mL) was comparable to ascorbic acid in antioxidative activity against 2,2-diphenyl-1-picrylhydrazyl (DPPH) radicals (IC<sub>50</sub> 11.38 µg/mL). From DFT (density functional theory) calculations, its principal radical mechanism in gas and lipid was the FHT (formal hydrogen transfer), whereas the SPL-ET (sequential proton loss-electron transfer) was the main way in water. Hydroxyl groups were crucial radical scavenging sites, especially at carbon C-4′. Kinetic evidence indicated that the reactions between the studied compound with HOO˙ radicals resulted in the <i>k</i><sub>overall</sub> (overall rate constant) of 2.5 × 10<sup>9</sup> and 1.07 × 10<sup>3</sup> (M s)<sup>−1</sup> in water and pentyl ethanoate, respectively. The studied molecule also chelated to Zn metal ion to form Zn(3-methoxyluteolin)<sub>2</sub> complex with the lowest binding energy value of −322.911 kcal/mol. Considering the neurodegenerative inhibitory potentials of the studied compound, molecular docking results revealed that 3-methoxyluteolin interacted with the active sites of both acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) with the binding affinities of −9.493 and −8.812 kcal/mol, respectively, which are stronger than the reference compound tacrine. To assess the structural stability and binding interactions with each studied protein, molecular dynamics simulations were conducted. The results indicated that the 3-methoxyluteolin complexes with AChE and BChE remained stable during a simulation period.</p>\\n </div>\",\"PeriodicalId\":9878,\"journal\":{\"name\":\"Chemistry & Biodiversity\",\"volume\":\"22 5\",\"pages\":\"\"},\"PeriodicalIF\":2.5000,\"publicationDate\":\"2024-12-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chemistry & Biodiversity\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/cbdv.202402993\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemistry & Biodiversity","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/cbdv.202402993","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Antioxidative Potential of 3-Methoxyluteolin: Density Functional Theory (DFT), Molecular Docking, and Dynamics—A Combined Experimental and Computational Study
The current study first describes the antioxidative potential of 3-methoxyluteolin. The experimental result is supported by computational approaches. The studied flavone (IC50 12.40 µg/mL) was comparable to ascorbic acid in antioxidative activity against 2,2-diphenyl-1-picrylhydrazyl (DPPH) radicals (IC50 11.38 µg/mL). From DFT (density functional theory) calculations, its principal radical mechanism in gas and lipid was the FHT (formal hydrogen transfer), whereas the SPL-ET (sequential proton loss-electron transfer) was the main way in water. Hydroxyl groups were crucial radical scavenging sites, especially at carbon C-4′. Kinetic evidence indicated that the reactions between the studied compound with HOO˙ radicals resulted in the koverall (overall rate constant) of 2.5 × 109 and 1.07 × 103 (M s)−1 in water and pentyl ethanoate, respectively. The studied molecule also chelated to Zn metal ion to form Zn(3-methoxyluteolin)2 complex with the lowest binding energy value of −322.911 kcal/mol. Considering the neurodegenerative inhibitory potentials of the studied compound, molecular docking results revealed that 3-methoxyluteolin interacted with the active sites of both acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) with the binding affinities of −9.493 and −8.812 kcal/mol, respectively, which are stronger than the reference compound tacrine. To assess the structural stability and binding interactions with each studied protein, molecular dynamics simulations were conducted. The results indicated that the 3-methoxyluteolin complexes with AChE and BChE remained stable during a simulation period.
期刊介绍:
Chemistry & Biodiversity serves as a high-quality publishing forum covering a wide range of biorelevant topics for a truly international audience. This journal publishes both field-specific and interdisciplinary contributions on all aspects of biologically relevant chemistry research in the form of full-length original papers, short communications, invited reviews, and commentaries. It covers all research fields straddling the border between the chemical and biological sciences, with the ultimate goal of broadening our understanding of how nature works at a molecular level.
Since 2017, Chemistry & Biodiversity is published in an online-only format.