3-甲氧基木犀草素的抗氧化潜能:密度泛函理论(DFT)、分子对接与动力学——实验与计算相结合的研究。

IF 2.5 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Vu Minh Trang, Nguyen Xuan Ha, Ninh The Son
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引用次数: 0

摘要

黄酮3-甲氧基木草素(IC50为12.40µg/mL)对2,2-二苯基-1-苦味酰肼(DPPH)自由基的抗氧化活性与抗坏血酸相当(IC50为11.38µg/mL)。从DFT(密度泛函数理论)计算,其在气体和脂质中的主要自由基机制是FHT(形式氢转移),而在水中的主要自由基机制是SPL-ET(顺序质子损失电子转移)。羟基,尤其是碳C-4′上的羟基,是清除自由基的关键位点。动力学证据表明,所研究的化合物与HOO˙自由基在水中和乙醇戊酯中的总速率常数分别为2.5 × 109和1.07 × 103 M-1 s-1。所研究的分子与锌金属离子螯合形成Zn(3-甲氧基木贼素)2配合物,最低结合能为-322.911 kcal/mol。考虑到所研究化合物的神经退行性抑制电位,分子对接结果显示,3-甲氧基木贼素与乙酰胆碱酯酶(AChE)和丁基胆碱酯酶(BChE)活性位点相互作用,结合亲和力分别为-9.493和-8.812 kcal/mol,比参比化合物塔克林强。为了评估结构稳定性和与每个研究蛋白的结合相互作用,进行了分子动力学模拟。结果表明,3-甲氧基木犀草素与乙酰胆碱和BChE的配合物在模拟期间保持稳定。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Antioxidative Potential of 3-Methoxyluteolin: Density Functional Theory (DFT), Molecular Docking, and Dynamics—A Combined Experimental and Computational Study

Antioxidative Potential of 3-Methoxyluteolin: Density Functional Theory (DFT), Molecular Docking, and Dynamics—A Combined Experimental and Computational Study

The current study first describes the antioxidative potential of 3-methoxyluteolin. The experimental result is supported by computational approaches. The studied flavone (IC50 12.40 µg/mL) was comparable to ascorbic acid in antioxidative activity against 2,2-diphenyl-1-picrylhydrazyl (DPPH) radicals (IC50 11.38 µg/mL). From DFT (density functional theory) calculations, its principal radical mechanism in gas and lipid was the FHT (formal hydrogen transfer), whereas the SPL-ET (sequential proton loss-electron transfer) was the main way in water. Hydroxyl groups were crucial radical scavenging sites, especially at carbon C-4′. Kinetic evidence indicated that the reactions between the studied compound with HOO˙ radicals resulted in the koverall (overall rate constant) of 2.5 × 109 and 1.07 × 103 (M s)−1 in water and pentyl ethanoate, respectively. The studied molecule also chelated to Zn metal ion to form Zn(3-methoxyluteolin)2 complex with the lowest binding energy value of −322.911 kcal/mol. Considering the neurodegenerative inhibitory potentials of the studied compound, molecular docking results revealed that 3-methoxyluteolin interacted with the active sites of both acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) with the binding affinities of −9.493 and −8.812 kcal/mol, respectively, which are stronger than the reference compound tacrine. To assess the structural stability and binding interactions with each studied protein, molecular dynamics simulations were conducted. The results indicated that the 3-methoxyluteolin complexes with AChE and BChE remained stable during a simulation period.

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来源期刊
Chemistry & Biodiversity
Chemistry & Biodiversity 环境科学-化学综合
CiteScore
3.40
自引率
10.30%
发文量
475
审稿时长
2.6 months
期刊介绍: Chemistry & Biodiversity serves as a high-quality publishing forum covering a wide range of biorelevant topics for a truly international audience. This journal publishes both field-specific and interdisciplinary contributions on all aspects of biologically relevant chemistry research in the form of full-length original papers, short communications, invited reviews, and commentaries. It covers all research fields straddling the border between the chemical and biological sciences, with the ultimate goal of broadening our understanding of how nature works at a molecular level. Since 2017, Chemistry & Biodiversity is published in an online-only format.
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