来自Serratia sp. ATCC 39006的一种新型异聚氨基转移酶的晶体结构提供了对功能的见解。

IF 3.5 4区 生物学 Q1 Biochemistry, Genetics and Molecular Biology
Heru Pramono, Ayako Yoshida, Yuki Hirashima, Yusuke Sone, Tohru Terada, Saori Kosono, Makoto Nishiyama
{"title":"来自Serratia sp. ATCC 39006的一种新型异聚氨基转移酶的晶体结构提供了对功能的见解。","authors":"Heru Pramono,&nbsp;Ayako Yoshida,&nbsp;Yuki Hirashima,&nbsp;Yusuke Sone,&nbsp;Tohru Terada,&nbsp;Saori Kosono,&nbsp;Makoto Nishiyama","doi":"10.1002/1873-3468.15068","DOIUrl":null,"url":null,"abstract":"<p><i>Serratia</i> sp. ATCC 39006 has two tandemly positioned genes, <i>ser4</i> and <i>ser5</i>, both annotated as sugar aminotransferases, in a putative secondary metabolite biosynthetic gene cluster. Ser5 possesses a complete fold-type I aminotransferase fold, while Ser4 lacks the N- and C-terminal regions and a catalytically important lysine residue of fold-type I aminotransferase. We herein revealed that Ser4 and Ser5 formed a heterotetrameric complex (<i>Ser</i>TA) with aminotransferase activity and determined the crystal structures. MD simulations and activity assays with <i>Ser</i>TA variants indicated that residues from helix α-8* of inactive Ser4 are important for activity, confirming the importance of heterocomplex formation for activity. Furthermore, the structures suggest that <i>Ser</i>TA recognizes a substrate loaded on the carrier protein.</p>","PeriodicalId":12142,"journal":{"name":"FEBS Letters","volume":"599 1","pages":"74-88"},"PeriodicalIF":3.5000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11726168/pdf/","citationCount":"0","resultStr":"{\"title\":\"Crystal structure of a novel heterooligomeric aminotransferase from Serratia sp. ATCC 39006 provides insights into function\",\"authors\":\"Heru Pramono,&nbsp;Ayako Yoshida,&nbsp;Yuki Hirashima,&nbsp;Yusuke Sone,&nbsp;Tohru Terada,&nbsp;Saori Kosono,&nbsp;Makoto Nishiyama\",\"doi\":\"10.1002/1873-3468.15068\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><i>Serratia</i> sp. ATCC 39006 has two tandemly positioned genes, <i>ser4</i> and <i>ser5</i>, both annotated as sugar aminotransferases, in a putative secondary metabolite biosynthetic gene cluster. Ser5 possesses a complete fold-type I aminotransferase fold, while Ser4 lacks the N- and C-terminal regions and a catalytically important lysine residue of fold-type I aminotransferase. We herein revealed that Ser4 and Ser5 formed a heterotetrameric complex (<i>Ser</i>TA) with aminotransferase activity and determined the crystal structures. MD simulations and activity assays with <i>Ser</i>TA variants indicated that residues from helix α-8* of inactive Ser4 are important for activity, confirming the importance of heterocomplex formation for activity. Furthermore, the structures suggest that <i>Ser</i>TA recognizes a substrate loaded on the carrier protein.</p>\",\"PeriodicalId\":12142,\"journal\":{\"name\":\"FEBS Letters\",\"volume\":\"599 1\",\"pages\":\"74-88\"},\"PeriodicalIF\":3.5000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11726168/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"FEBS Letters\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/1873-3468.15068\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"FEBS Letters","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/1873-3468.15068","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0

摘要

Serratia sp. ATCC 39006在一个假定的次生代谢物生物合成基因簇中有两个串联定位的基因,ser4和ser5,它们都被注释为糖氨基转移酶。Ser5具有完整的I型转氨酶折叠,而Ser4缺乏I型转氨酶的N端和c端区域以及具有重要催化作用的赖氨酸残基。我们发现Ser4和Ser5形成了具有转氨酶活性的异四聚体复合物(SerTA),并确定了晶体结构。MD模拟和SerTA变体的活性分析表明,失活Ser4的螺旋α-8*残基对活性很重要,证实了杂络合物形成对活性的重要性。此外,这些结构表明SerTA识别装载在载体蛋白上的底物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Crystal structure of a novel heterooligomeric aminotransferase from Serratia sp. ATCC 39006 provides insights into function

Crystal structure of a novel heterooligomeric aminotransferase from Serratia sp. ATCC 39006 provides insights into function

Serratia sp. ATCC 39006 has two tandemly positioned genes, ser4 and ser5, both annotated as sugar aminotransferases, in a putative secondary metabolite biosynthetic gene cluster. Ser5 possesses a complete fold-type I aminotransferase fold, while Ser4 lacks the N- and C-terminal regions and a catalytically important lysine residue of fold-type I aminotransferase. We herein revealed that Ser4 and Ser5 formed a heterotetrameric complex (SerTA) with aminotransferase activity and determined the crystal structures. MD simulations and activity assays with SerTA variants indicated that residues from helix α-8* of inactive Ser4 are important for activity, confirming the importance of heterocomplex formation for activity. Furthermore, the structures suggest that SerTA recognizes a substrate loaded on the carrier protein.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
FEBS Letters
FEBS Letters 生物-生化与分子生物学
CiteScore
7.00
自引率
2.90%
发文量
303
审稿时长
1.0 months
期刊介绍: FEBS Letters is one of the world''s leading journals in molecular biology and is renowned both for its quality of content and speed of production. Bringing together the most important developments in the molecular biosciences, FEBS Letters provides an international forum for Minireviews, Research Letters and Hypotheses that merit urgent publication.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信