基于集成学习方法提高拉曼测量的信噪比。

IF 3.8 2区 化学 Q1 BIOCHEMICAL RESEARCH METHODS
Analytical and Bioanalytical Chemistry Pub Date : 2025-01-01 Epub Date: 2024-11-30 DOI:10.1007/s00216-024-05676-0
Yufei Jia, Yuning Gao, Wenbin Xu, Yunxin Wang, Zejun Yan, Keren Chen, Shuo Chen
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引用次数: 0

摘要

拉曼光谱是一种广泛探索的振动光谱技术,用于分析样品的生化组成和分子结构,通常认为在适当的激光功率和曝光时间下,该技术是无损的。然而,固有的微弱拉曼信号和并发的荧光干扰往往导致拉曼测量具有低信噪比(SNR),特别是对生物样品。为了提高信噪比,人们已经做出了巨大的努力来开发实验方法和/或数值算法。在这项研究中,我们提出了一种集成学习方法来恢复和降噪低信噪比的拉曼测量。在986对拉曼测量数据上对集成学习方法进行了评估,每对拉曼测量数据由来自同一真菌样本的低信噪比拉曼光谱和高信噪比参考拉曼光谱组成,但使用了200倍的积分时间。与传统方法相比,集成学习方法恢复的拉曼测量值与高信噪比参考拉曼测量值更加接近,平均RMSE和MAE分别仅为1.337 × 10-2和1.066 × 10-2;因此,所提出的集成学习方法有望成为在数值上提高拉曼测量信噪比的有力工具,并进一步有利于从生物样品中快速获取拉曼。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Improving signal-to-noise ratio of Raman measurements based on ensemble learning approach.

Raman spectroscopy is an extensively explored vibrational spectroscopic technique to analyze the biochemical composition and molecular structure of samples, which is often assumed to be non-destructive when carefully using proper laser power and exposure time. However, the inherently weak Raman signal and concurrent fluorescence interference often lead to Raman measurements with a low signal-to-noise ratio (SNR), especially for biological samples. Great efforts have been made to develop experimental approaches and/or numerical algorithms to improve the SNR. In this study, we proposed an ensemble learning approach to recover and denoise Raman measurements with a low SNR. The proposed ensemble learning approach was evaluated on 986 pairs of Raman measurements, each pair of which consists of a low SNR Raman spectrum and a high SNR reference Raman spectrum from the exact same fungal sample but uses 200 times the integration time. Compared with conventional methods, the Raman measurements recovered by the proposed ensemble learning approach are more identical to high SNR reference Raman measurements, with an average RMSE and MAE of only 1.337 × 10-2 and 1.066 × 10-2, respectively; thus, the proposed ensemble learning approach is expected to be a powerful tool for numerically improving the SNR of Raman measurements and further benefits rapid Raman acquisition from biological samples.

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来源期刊
CiteScore
8.00
自引率
4.70%
发文量
638
审稿时长
2.1 months
期刊介绍: Analytical and Bioanalytical Chemistry’s mission is the rapid publication of excellent and high-impact research articles on fundamental and applied topics of analytical and bioanalytical measurement science. Its scope is broad, and ranges from novel measurement platforms and their characterization to multidisciplinary approaches that effectively address important scientific problems. The Editors encourage submissions presenting innovative analytical research in concept, instrumentation, methods, and/or applications, including: mass spectrometry, spectroscopy, and electroanalysis; advanced separations; analytical strategies in “-omics” and imaging, bioanalysis, and sampling; miniaturized devices, medical diagnostics, sensors; analytical characterization of nano- and biomaterials; chemometrics and advanced data analysis.
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