cdugksFoam求解器在神威太湖之光超级计算机上的实现与优化

IF 7.2 2区 物理与天体物理 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Jie Guo , Yunlan Wang , Rui Zhang , Feifei Zhang , Tianhai Zhao , Congshan Zhuo , Sha Liu , Chengwen Zhong
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引用次数: 0

摘要

本研究采用MPI + thread编程模型,在神威太湖之光系统上成功实现了cdugksFoam求解器。为了充分利用异构SW26010多核处理器,我们实现了三个级别的并行化:物理空间和速度空间的MPI进程级混合并行化,进一步划分物理空间的线程级并行化,以及单指令多数据(SIMD)向量化。为了解决SW26010处理器低内存带宽带来的性能瓶颈,设计并实现了一系列优化方法,包括内核融合、超越函数优化和软缓存,以减少离散内存访问,提高cpe的计算效率。通过对三维盖驱动腔体流动和稀薄超声速流过球体的模拟,验证了优化程序的准确性。基于多个网格尺度的实验结果,与在管理处理元素上运行相比,整体性能提高了5倍以上。在强扩展性和弱扩展性测试中,并行效率均超过90%。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Implementation and optimisation of the cdugksFoam solver on the Sunway TaihuLight supercomputer
In this study, the cdugksFoam solver was successfully implemented on the Sunway TaihuLight system using the MPI + Athread programming model. To utilise the heterogeneous SW26010 many-core processor fully, we implemented three levels of parallelisation: MPI process-level hybrid parallelisation in physical space and velocity space, thread-level parallelisation to further partition physical space, and single-instruction multiple-data (SIMD) vectorisation. To address the performance bottleneck caused by the low memory bandwidth of the SW26010 processor, a series of optimisation methods, including kernel fusion, transcendental function optimisation, and soft cache, were designed and implemented to reduce discrete memory access and improve the computational efficiency of CPEs. The accuracy of the optimised program was validated through simulations of the 3D lid-driven cavity flow and rarefied supersonic flow past a sphere. Based on the experimental results from multiple grid scales, the overall performance achieved an acceleration of over 5 times compared to running on the management processing elements. In both strong and weak scalability tests, a parallel efficiency exceeding 90% was achieved.
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来源期刊
Computer Physics Communications
Computer Physics Communications 物理-计算机:跨学科应用
CiteScore
12.10
自引率
3.20%
发文量
287
审稿时长
5.3 months
期刊介绍: The focus of CPC is on contemporary computational methods and techniques and their implementation, the effectiveness of which will normally be evidenced by the author(s) within the context of a substantive problem in physics. Within this setting CPC publishes two types of paper. Computer Programs in Physics (CPiP) These papers describe significant computer programs to be archived in the CPC Program Library which is held in the Mendeley Data repository. The submitted software must be covered by an approved open source licence. Papers and associated computer programs that address a problem of contemporary interest in physics that cannot be solved by current software are particularly encouraged. Computational Physics Papers (CP) These are research papers in, but are not limited to, the following themes across computational physics and related disciplines. mathematical and numerical methods and algorithms; computational models including those associated with the design, control and analysis of experiments; and algebraic computation. Each will normally include software implementation and performance details. The software implementation should, ideally, be available via GitHub, Zenodo or an institutional repository.In addition, research papers on the impact of advanced computer architecture and special purpose computers on computing in the physical sciences and software topics related to, and of importance in, the physical sciences may be considered.
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