Xuanyun Qiu, Beihan Chen, Dan Lin, Guohua Liu, Zhiyi Su, Mingzhe Zhang, Kai Tang
{"title":"Cerasicoccus fimbriatus sp.","authors":"Xuanyun Qiu, Beihan Chen, Dan Lin, Guohua Liu, Zhiyi Su, Mingzhe Zhang, Kai Tang","doi":"10.1007/s10482-024-02047-8","DOIUrl":null,"url":null,"abstract":"<div><p>A Gram-stain-negative bacterium, designated as strain TK19100<sup>T</sup>, was isolated from the mid-ridge of the Southwest Indian Ocean. Cells of strain TK19100<sup>T</sup> were strictly aerobic, non-motile and short-rod shaped with fimbriae-like structures around the cell surface. Growth occurred at 15–40 °C, at pH 6.0–9.0 and with 1–10% (w/v) NaCl. Strain TK19100<sup>T</sup> shared the highest 16S rRNA gene sequence similarity with <i>Cerasicoccus frondis</i> NBRC 105381<sup>T</sup> of 97.74%, followed by <i>Cerasicoccus arenae</i> KCTC 12870<sup>T</sup> of 97.69% and <i>Cerasicoccus maritimus</i> NBRC 105382<sup>T</sup> of 97.40%. The phylogenetic tree based on both 16S rRNA genes and 92 core genes placed strain TK19100<sup>T</sup> in a new linage within the genus <i>Cerasicoccus</i>. The genome size of strain TK19100<sup>T</sup> was 5.07 Mb with the DNA G + C content 56.1%. The average nucleotide identity value and the digital DNA-DNA hybridization value of strain TK19100<sup>T</sup> compared with the closest related species, <i>Cerasicoccus frondis</i>, were 78.39% and 23.70%, respectively. Strain TK19100<sup>T</sup> encoded a previously unreported combination of GH16 and Carbohydrate Binding Module 96. The major fatty acids of strain TK19100<sup>T</sup> were C<sub>14:0</sub> and C<sub>18:1</sub> <i>ω</i>9<i>c</i>. Menaquinone-7 was the sole respiratory quinone. The phenotypic and genotypic characterization analysis indicate that strain TK19100<sup>T</sup> represents a novel species affiliated to the genus <i>Cerasicoccus</i>, for which the name <i>Cerasicoccus fimbriatus</i> sp. nov. is proposed. The type strain is TK19100<sup>T</sup> (= CGMCC 1.18957<sup>T</sup> = NBRC 116189<sup>T</sup>).</p></div>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 1","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Cerasicoccus fimbriatus sp. nov., isolated from the mid-ridge of the Southwest Indian Ocean\",\"authors\":\"Xuanyun Qiu, Beihan Chen, Dan Lin, Guohua Liu, Zhiyi Su, Mingzhe Zhang, Kai Tang\",\"doi\":\"10.1007/s10482-024-02047-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A Gram-stain-negative bacterium, designated as strain TK19100<sup>T</sup>, was isolated from the mid-ridge of the Southwest Indian Ocean. Cells of strain TK19100<sup>T</sup> were strictly aerobic, non-motile and short-rod shaped with fimbriae-like structures around the cell surface. Growth occurred at 15–40 °C, at pH 6.0–9.0 and with 1–10% (w/v) NaCl. Strain TK19100<sup>T</sup> shared the highest 16S rRNA gene sequence similarity with <i>Cerasicoccus frondis</i> NBRC 105381<sup>T</sup> of 97.74%, followed by <i>Cerasicoccus arenae</i> KCTC 12870<sup>T</sup> of 97.69% and <i>Cerasicoccus maritimus</i> NBRC 105382<sup>T</sup> of 97.40%. The phylogenetic tree based on both 16S rRNA genes and 92 core genes placed strain TK19100<sup>T</sup> in a new linage within the genus <i>Cerasicoccus</i>. The genome size of strain TK19100<sup>T</sup> was 5.07 Mb with the DNA G + C content 56.1%. The average nucleotide identity value and the digital DNA-DNA hybridization value of strain TK19100<sup>T</sup> compared with the closest related species, <i>Cerasicoccus frondis</i>, were 78.39% and 23.70%, respectively. Strain TK19100<sup>T</sup> encoded a previously unreported combination of GH16 and Carbohydrate Binding Module 96. The major fatty acids of strain TK19100<sup>T</sup> were C<sub>14:0</sub> and C<sub>18:1</sub> <i>ω</i>9<i>c</i>. Menaquinone-7 was the sole respiratory quinone. The phenotypic and genotypic characterization analysis indicate that strain TK19100<sup>T</sup> represents a novel species affiliated to the genus <i>Cerasicoccus</i>, for which the name <i>Cerasicoccus fimbriatus</i> sp. nov. is proposed. The type strain is TK19100<sup>T</sup> (= CGMCC 1.18957<sup>T</sup> = NBRC 116189<sup>T</sup>).</p></div>\",\"PeriodicalId\":50746,\"journal\":{\"name\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"volume\":\"118 1\",\"pages\":\"\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2024-11-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10482-024-02047-8\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10482-024-02047-8","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Cerasicoccus fimbriatus sp. nov., isolated from the mid-ridge of the Southwest Indian Ocean
A Gram-stain-negative bacterium, designated as strain TK19100T, was isolated from the mid-ridge of the Southwest Indian Ocean. Cells of strain TK19100T were strictly aerobic, non-motile and short-rod shaped with fimbriae-like structures around the cell surface. Growth occurred at 15–40 °C, at pH 6.0–9.0 and with 1–10% (w/v) NaCl. Strain TK19100T shared the highest 16S rRNA gene sequence similarity with Cerasicoccus frondis NBRC 105381T of 97.74%, followed by Cerasicoccus arenae KCTC 12870T of 97.69% and Cerasicoccus maritimus NBRC 105382T of 97.40%. The phylogenetic tree based on both 16S rRNA genes and 92 core genes placed strain TK19100T in a new linage within the genus Cerasicoccus. The genome size of strain TK19100T was 5.07 Mb with the DNA G + C content 56.1%. The average nucleotide identity value and the digital DNA-DNA hybridization value of strain TK19100T compared with the closest related species, Cerasicoccus frondis, were 78.39% and 23.70%, respectively. Strain TK19100T encoded a previously unreported combination of GH16 and Carbohydrate Binding Module 96. The major fatty acids of strain TK19100T were C14:0 and C18:1ω9c. Menaquinone-7 was the sole respiratory quinone. The phenotypic and genotypic characterization analysis indicate that strain TK19100T represents a novel species affiliated to the genus Cerasicoccus, for which the name Cerasicoccus fimbriatus sp. nov. is proposed. The type strain is TK19100T (= CGMCC 1.18957T = NBRC 116189T).
期刊介绍:
Antonie van Leeuwenhoek publishes papers on fundamental and applied aspects of microbiology. Topics of particular interest include: taxonomy, structure & development; biochemistry & molecular biology; physiology & metabolic studies; genetics; ecological studies; especially molecular ecology; marine microbiology; medical microbiology; molecular biological aspects of microbial pathogenesis and bioinformatics.