Jannaschia ovalis sp.

IF 1.8 3区 生物学 Q4 MICROBIOLOGY
Dae Young Kwon, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, Jae-Jin Kim
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引用次数: 0

摘要

从大韩民国黄海加罗林湾采集的潮汐平地沉积物中分离出一种革兰氏染色阴性、非运动性、需氧、淡黄色、椭圆形的细菌,命名为 GRR-S6-38T。菌株 GRR-S6-38T 在 15-40 °C(最适温度 30 °C)、pH 值 6-9 (最适 pH 值 7)和 2-6%(w/v)NaCl(最适 NaCl 值 2%)条件下生长。基于 16S rRNA 基因序列的系统发育分析表明,菌株 GRR-S6-38T 与 J. seosinensis CL-SP26T (98.1%)、J. helgolandensis DSM 14858T (97.4%), J. rubra CECT 5088T (97.4%), J. faecimaris DSM 100420T (97.4%), J. marina SHC163T (97.3%), J. donghaensis CECT 7802T (97.2%) and J. pohangensis DSM 19073T (97.1%).GRR-S6-38T 与相关类型菌株的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 71.47%-78.59% 和 17.80-21.40%。菌株 GRR-S6-38T 的特征是主要呼吸醌为 Q-10,主要脂肪酸(> 10%)为 SF 8(C18:1 ω7c/C18:1 ω6c, 39.3%)、C19:0 ω8c cyclo(13.2%)和 C18:1 ω7c 11-甲基(10.6%)。极性脂质包括二磷脂酰甘油、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油、一种不明脂质、两种不明氨基脂质和两种不明磷脂。GRR-S6-38T 菌株的基因组总长度为 3.32 Mbp,G+C 含量为 69.98%。根据本研究中提出的多相分类证据,GRR-S6-38T 被认为是 Jannaschia 属中的一个新物种,因此被命名为 Jannaschia ovalis sp.模式菌株为 GRR-S6-38T (= KCTC 82518 = KACC 22240 = JCM 36187)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea

Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea

A Gram-stain-negative, non-motile, aerobic, pale-yellow coloured and oval-shaped bacterium designated GRR-S6-38T was isolated from a tidal flat sediment that collected from Garorim Bay of the Yellow Sea, Republic of Korea. Strain GRR-S6-38T grew at 15–40 °C (optimum, 30 °C) at pH 6–9 (optimum, pH 7) and at 2–6% (w/v) NaCl (optimum, 2% NaCl). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain GRR-S6-38T was closely related to those of J. seosinensis CL-SP26T (98.1%), J. helgolandensis DSM 14858T (97.4%), J. rubra CECT 5088T (97.4%), J. faecimaris DSM 100420T (97.4%), J. marina SHC163T (97.3%), J. donghaensis CECT 7802T (97.2%) and J. pohangensis DSM 19073T (97.1%). The average nucleotide identity and digital DNA-DNA hybridization value between GRR-S6-38T and related type strains were 71.47–78.59% and 17.80–21.40%. Strain GRR-S6-38T was characterized as having Q-10 as the predominant respiratory quinone and the major principle fatty acids (> 10%) were SF 8 (C18:1 ω7c/C18:1 ω6c, 39.3%), C19:0 ω8c cyclo (13.2%) and C18:1 ω7c 11-methyl (10.6%). The polar lipids consisted of diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an unidentified lipid, two unidentified aminolipids and two unidentified phospholipids. The assembled genome of strain GRR-S6-38T has a total length of 3.32 Mbp, and a G + C content is 69.98%. Based on the polyphasic taxonomic evidence presented in this study, GRR-S6-38T is regarded to represent a novel species within the genus Jannaschia, for which name Jannaschia ovalis sp. nov. is proposed. The type strain is GRR-S6-38T (= KCTC 82518 = KACC 22240 = JCM 36187).

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来源期刊
CiteScore
5.60
自引率
11.50%
发文量
104
审稿时长
3 months
期刊介绍: Antonie van Leeuwenhoek publishes papers on fundamental and applied aspects of microbiology. Topics of particular interest include: taxonomy, structure & development; biochemistry & molecular biology; physiology & metabolic studies; genetics; ecological studies; especially molecular ecology; marine microbiology; medical microbiology; molecular biological aspects of microbial pathogenesis and bioinformatics.
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