Dae Young Kwon, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, Jae-Jin Kim
{"title":"Jannaschia ovalis sp.","authors":"Dae Young Kwon, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, Jae-Jin Kim","doi":"10.1007/s10482-024-02044-x","DOIUrl":null,"url":null,"abstract":"<div><p>A Gram-stain-negative, non-motile, aerobic, pale-yellow coloured and oval-shaped bacterium designated GRR-S6-38<sup>T</sup> was isolated from a tidal flat sediment that collected from Garorim Bay of the Yellow Sea, Republic of Korea. Strain GRR-S6-38<sup>T</sup> grew at 15–40 °C (optimum, 30 °C) at pH 6–9 (optimum, pH 7) and at 2–6% (w/v) NaCl (optimum, 2% NaCl). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain GRR-S6-38<sup>T</sup> was closely related to those of <i>J. seosinensis</i> CL-SP26<sup>T</sup> (98.1%), <i>J. helgolandensis</i> DSM 14858<sup>T</sup> (97.4%), <i>J. rubra</i> CECT 5088<sup>T</sup> (97.4%), <i>J. faecimaris</i> DSM 100420<sup>T</sup> (97.4%), <i>J. marina</i> SHC163<i>T</i> (97.3%), <i>J. donghaensis</i> CECT 7802<sup>T</sup> (97.2%) and <i>J. pohangensis</i> DSM 19073<sup>T</sup> (97.1%). The average nucleotide identity and digital DNA-DNA hybridization value between GRR-S6-38<sup>T</sup> and related type strains were 71.47–78.59% and 17.80–21.40%. Strain GRR-S6-38<sup>T</sup> was characterized as having Q-10 as the predominant respiratory quinone and the major principle fatty acids (> 10%) were SF 8 (C<sub>18:1</sub> <i>ω</i>7<i>c</i>/C<sub>18:1</sub> <i>ω</i>6<i>c</i>, 39.3%), C<sub>19:0</sub> <i>ω</i>8<i>c</i> cyclo (13.2%) and C<sub>18:1</sub> <i>ω</i>7<i>c</i> 11-methyl (10.6%). The polar lipids consisted of diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an unidentified lipid, two unidentified aminolipids and two unidentified phospholipids. The assembled genome of strain GRR-S6-38<sup>T</sup> has a total length of 3.32 Mbp, and a G + C content is 69.98%. Based on the polyphasic taxonomic evidence presented in this study, GRR-S6-38<sup>T</sup> is regarded to represent a novel species within the genus <i>Jannaschia</i>, for which name <i>Jannaschia ovalis</i> sp. nov. is proposed. The type strain is GRR-S6-38<sup>T</sup> (= KCTC 82518 = KACC 22240 = JCM 36187).</p></div>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 1","pages":""},"PeriodicalIF":1.8000,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea\",\"authors\":\"Dae Young Kwon, Sang Hyun Lee, Jong Seong Khim, Xiaoyue Xu, Bogun Kim, In-Geol Choi, Yeonjae Yoo, Jae-Jin Kim\",\"doi\":\"10.1007/s10482-024-02044-x\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>A Gram-stain-negative, non-motile, aerobic, pale-yellow coloured and oval-shaped bacterium designated GRR-S6-38<sup>T</sup> was isolated from a tidal flat sediment that collected from Garorim Bay of the Yellow Sea, Republic of Korea. Strain GRR-S6-38<sup>T</sup> grew at 15–40 °C (optimum, 30 °C) at pH 6–9 (optimum, pH 7) and at 2–6% (w/v) NaCl (optimum, 2% NaCl). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain GRR-S6-38<sup>T</sup> was closely related to those of <i>J. seosinensis</i> CL-SP26<sup>T</sup> (98.1%), <i>J. helgolandensis</i> DSM 14858<sup>T</sup> (97.4%), <i>J. rubra</i> CECT 5088<sup>T</sup> (97.4%), <i>J. faecimaris</i> DSM 100420<sup>T</sup> (97.4%), <i>J. marina</i> SHC163<i>T</i> (97.3%), <i>J. donghaensis</i> CECT 7802<sup>T</sup> (97.2%) and <i>J. pohangensis</i> DSM 19073<sup>T</sup> (97.1%). The average nucleotide identity and digital DNA-DNA hybridization value between GRR-S6-38<sup>T</sup> and related type strains were 71.47–78.59% and 17.80–21.40%. Strain GRR-S6-38<sup>T</sup> was characterized as having Q-10 as the predominant respiratory quinone and the major principle fatty acids (> 10%) were SF 8 (C<sub>18:1</sub> <i>ω</i>7<i>c</i>/C<sub>18:1</sub> <i>ω</i>6<i>c</i>, 39.3%), C<sub>19:0</sub> <i>ω</i>8<i>c</i> cyclo (13.2%) and C<sub>18:1</sub> <i>ω</i>7<i>c</i> 11-methyl (10.6%). The polar lipids consisted of diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an unidentified lipid, two unidentified aminolipids and two unidentified phospholipids. The assembled genome of strain GRR-S6-38<sup>T</sup> has a total length of 3.32 Mbp, and a G + C content is 69.98%. Based on the polyphasic taxonomic evidence presented in this study, GRR-S6-38<sup>T</sup> is regarded to represent a novel species within the genus <i>Jannaschia</i>, for which name <i>Jannaschia ovalis</i> sp. nov. is proposed. The type strain is GRR-S6-38<sup>T</sup> (= KCTC 82518 = KACC 22240 = JCM 36187).</p></div>\",\"PeriodicalId\":50746,\"journal\":{\"name\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"volume\":\"118 1\",\"pages\":\"\"},\"PeriodicalIF\":1.8000,\"publicationDate\":\"2024-11-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10482-024-02044-x\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10482-024-02044-x","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Jannaschia ovalis sp. nov., a marine bacterium isolated from a tidal flat sediment in the Republic of Korea
A Gram-stain-negative, non-motile, aerobic, pale-yellow coloured and oval-shaped bacterium designated GRR-S6-38T was isolated from a tidal flat sediment that collected from Garorim Bay of the Yellow Sea, Republic of Korea. Strain GRR-S6-38T grew at 15–40 °C (optimum, 30 °C) at pH 6–9 (optimum, pH 7) and at 2–6% (w/v) NaCl (optimum, 2% NaCl). Phylogenetic analysis based on the 16S rRNA gene sequence indicated that strain GRR-S6-38T was closely related to those of J. seosinensis CL-SP26T (98.1%), J. helgolandensis DSM 14858T (97.4%), J. rubra CECT 5088T (97.4%), J. faecimaris DSM 100420T (97.4%), J. marina SHC163T (97.3%), J. donghaensis CECT 7802T (97.2%) and J. pohangensis DSM 19073T (97.1%). The average nucleotide identity and digital DNA-DNA hybridization value between GRR-S6-38T and related type strains were 71.47–78.59% and 17.80–21.40%. Strain GRR-S6-38T was characterized as having Q-10 as the predominant respiratory quinone and the major principle fatty acids (> 10%) were SF 8 (C18:1ω7c/C18:1ω6c, 39.3%), C19:0ω8c cyclo (13.2%) and C18:1ω7c 11-methyl (10.6%). The polar lipids consisted of diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an unidentified lipid, two unidentified aminolipids and two unidentified phospholipids. The assembled genome of strain GRR-S6-38T has a total length of 3.32 Mbp, and a G + C content is 69.98%. Based on the polyphasic taxonomic evidence presented in this study, GRR-S6-38T is regarded to represent a novel species within the genus Jannaschia, for which name Jannaschia ovalis sp. nov. is proposed. The type strain is GRR-S6-38T (= KCTC 82518 = KACC 22240 = JCM 36187).
期刊介绍:
Antonie van Leeuwenhoek publishes papers on fundamental and applied aspects of microbiology. Topics of particular interest include: taxonomy, structure & development; biochemistry & molecular biology; physiology & metabolic studies; genetics; ecological studies; especially molecular ecology; marine microbiology; medical microbiology; molecular biological aspects of microbial pathogenesis and bioinformatics.