Kaouthar Feki, Sana Tounsi, Hanen Kamoun, Abdulrahman Al-Hashim, Faiçal Brini
{"title":"解码硬粒小麦抗坏血酸过氧化物酶 TdAPX7B-2 在非生物胁迫响应中的作用","authors":"Kaouthar Feki, Sana Tounsi, Hanen Kamoun, Abdulrahman Al-Hashim, Faiçal Brini","doi":"10.1007/s10142-024-01505-w","DOIUrl":null,"url":null,"abstract":"<div><p>APX proteins are H<sub>2</sub>O<sub>2</sub>-scavenging enzymes induced during oxidative stress. In the first part of this study, we provided an extensive knowledge on the <i>APX</i> family of <i>Triticum durum</i>, <i>TdAPX</i> and their related <i>TdAPX-R</i>, via the genome wide analysis. The outcomes showed that these proteins are clustered into four major subgroups. Furthermore, the exon–intron structure and the synteny analyses revealed that during evolution the genes <i>TdAPX</i> and <i>TdAPX-R</i> are relatively conserved. Besides, during their evolution, these genes underwent purifying selection pressure and were duplicated in segmental. In parallel, the analysis of the conserved motifs and the multiple sequence alignment demonstrated that the residues involved in the active sites, heme- and cations-binding are conserved only in TdAPX proteins. Following the RNA-seq data and the regulatory elements analyses, we focused in the second part of this study on the functional characterization of <i>TdAPX7B-2</i>. The qRT-PCR data showed the upregulation of <i>TdAPX7B-2</i> essentially in leaves of durum wheat exposed to salt, cold, drought, metals and ABA treatments. The tolerance phenotype of the <i>TdAPX7B-2</i>-expressing <i>Arabidopsis</i> lines to salt, direct-induced oxidative stress and heavy metals was manifested by the development of root system, proline accumulation and induction of the antioxidant CAT, SOD and POD enzymes to maintain the non-toxic H<sub>2</sub>O<sub>2</sub> levels. Likewise, the response to salt stress and direct-oxidative stress of the transgenic lines was accompanied mainly by the induction of <i>AtNCED3, AtRD29A/B</i> and <i>AtERD1</i>.</p></div>","PeriodicalId":574,"journal":{"name":"Functional & Integrative Genomics","volume":"24 6","pages":""},"PeriodicalIF":3.9000,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Decoding the role of durum wheat ascorbate peroxidase TdAPX7B-2 in abiotic stress response\",\"authors\":\"Kaouthar Feki, Sana Tounsi, Hanen Kamoun, Abdulrahman Al-Hashim, Faiçal Brini\",\"doi\":\"10.1007/s10142-024-01505-w\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>APX proteins are H<sub>2</sub>O<sub>2</sub>-scavenging enzymes induced during oxidative stress. In the first part of this study, we provided an extensive knowledge on the <i>APX</i> family of <i>Triticum durum</i>, <i>TdAPX</i> and their related <i>TdAPX-R</i>, via the genome wide analysis. The outcomes showed that these proteins are clustered into four major subgroups. Furthermore, the exon–intron structure and the synteny analyses revealed that during evolution the genes <i>TdAPX</i> and <i>TdAPX-R</i> are relatively conserved. Besides, during their evolution, these genes underwent purifying selection pressure and were duplicated in segmental. In parallel, the analysis of the conserved motifs and the multiple sequence alignment demonstrated that the residues involved in the active sites, heme- and cations-binding are conserved only in TdAPX proteins. Following the RNA-seq data and the regulatory elements analyses, we focused in the second part of this study on the functional characterization of <i>TdAPX7B-2</i>. The qRT-PCR data showed the upregulation of <i>TdAPX7B-2</i> essentially in leaves of durum wheat exposed to salt, cold, drought, metals and ABA treatments. The tolerance phenotype of the <i>TdAPX7B-2</i>-expressing <i>Arabidopsis</i> lines to salt, direct-induced oxidative stress and heavy metals was manifested by the development of root system, proline accumulation and induction of the antioxidant CAT, SOD and POD enzymes to maintain the non-toxic H<sub>2</sub>O<sub>2</sub> levels. Likewise, the response to salt stress and direct-oxidative stress of the transgenic lines was accompanied mainly by the induction of <i>AtNCED3, AtRD29A/B</i> and <i>AtERD1</i>.</p></div>\",\"PeriodicalId\":574,\"journal\":{\"name\":\"Functional & Integrative Genomics\",\"volume\":\"24 6\",\"pages\":\"\"},\"PeriodicalIF\":3.9000,\"publicationDate\":\"2024-11-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Functional & Integrative Genomics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s10142-024-01505-w\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Functional & Integrative Genomics","FirstCategoryId":"99","ListUrlMain":"https://link.springer.com/article/10.1007/s10142-024-01505-w","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Decoding the role of durum wheat ascorbate peroxidase TdAPX7B-2 in abiotic stress response
APX proteins are H2O2-scavenging enzymes induced during oxidative stress. In the first part of this study, we provided an extensive knowledge on the APX family of Triticum durum, TdAPX and their related TdAPX-R, via the genome wide analysis. The outcomes showed that these proteins are clustered into four major subgroups. Furthermore, the exon–intron structure and the synteny analyses revealed that during evolution the genes TdAPX and TdAPX-R are relatively conserved. Besides, during their evolution, these genes underwent purifying selection pressure and were duplicated in segmental. In parallel, the analysis of the conserved motifs and the multiple sequence alignment demonstrated that the residues involved in the active sites, heme- and cations-binding are conserved only in TdAPX proteins. Following the RNA-seq data and the regulatory elements analyses, we focused in the second part of this study on the functional characterization of TdAPX7B-2. The qRT-PCR data showed the upregulation of TdAPX7B-2 essentially in leaves of durum wheat exposed to salt, cold, drought, metals and ABA treatments. The tolerance phenotype of the TdAPX7B-2-expressing Arabidopsis lines to salt, direct-induced oxidative stress and heavy metals was manifested by the development of root system, proline accumulation and induction of the antioxidant CAT, SOD and POD enzymes to maintain the non-toxic H2O2 levels. Likewise, the response to salt stress and direct-oxidative stress of the transgenic lines was accompanied mainly by the induction of AtNCED3, AtRD29A/B and AtERD1.
期刊介绍:
Functional & Integrative Genomics is devoted to large-scale studies of genomes and their functions, including systems analyses of biological processes. The journal will provide the research community an integrated platform where researchers can share, review and discuss their findings on important biological questions that will ultimately enable us to answer the fundamental question: How do genomes work?