整合计算建模和实验验证,揭示 Alhagi graecorum 中黄酮类化合物的酪氨酸酶抑制机制

IF 4.3 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
Reem S. Alruhaimi, Ayman M. Mahmoud, Sulaiman M. Alnasser, Mohammed F. Alotaibi, Ibrahim Elbagory, Ashraf A. El-Bassuony, Al Mokhtar Lamsabhi and Emadeldin M. Kamel*, 
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引用次数: 0

摘要

类黄酮是人类饮食中无处不在的天然化合物,因其多方面的药理特性而备受推崇。研究人员通过体外和硅学方法的综合集成,对来自 Alhagi graecorum 的五种黄酮类化合物的酪氨酸酶抑制能力进行了研究。分子对接模拟表明,分离出的化合物与酪氨酸酶的主要结合位点结合良好,类似于标准的酪氨酸酶抑制剂曲酸。这些化合物表现出类似的结合亲和力,其中化合物 5 的极性键和疏水相互作用水平明显提高。研究人员利用分子动力学(MD)模拟来探索分离出的黄酮类化合物与酪氨酸酶之间的相互作用动力学。对各种 MD 参数的分析表明,所测试的化合物具有一致的轨迹,其中化合物 5 表现出明显的能量平衡。在类黄酮和酪氨酸酶活性位点之间观察到了强烈的氢键相互作用。相互作用能计算的结果表明,疏水相互作用介导了一种平衡的相互作用,其中化合物 5 的相互作用能最低。此外,MM/PBSA 分析结果表明化合物 5 的结合自由能最低。此外,体外酪氨酸酶抑制试验显示,所研究的黄酮类化合物之间存在明显差异。尤其是化合物 5 的 IC50 值最低,表明其抗酪氨酸酶活性最明显。这一实验结果与计算预测结果一致。因此,A. graecorum 的黄酮类化合物可能对开发酪氨酸酶抑制剂很有价值。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Integrating Computational Modeling and Experimental Validation to Unveil Tyrosinase Inhibition Mechanisms of Flavonoids from Alhagi graecorum

Flavonoids, natural compounds ubiquitous in the human diet, are esteemed for their multifaceted pharmacological properties. The tyrosinase inhibitory capacity of five flavonoids from Alhagi graecorum was investigated through a comprehensive integration of in vitro and in silico methodologies. Molecular docking simulations demonstrated the proficient binding of the isolated compounds to the principal binding site of tyrosinase, akin to the standard tyrosinase inhibitor kojic acid. These compounds exhibited analogous binding affinities, among which compound 5 manifested notably heightened levels of polar bonds and hydrophobic interactions. Molecular dynamics (MD) simulations were utilized to explore the interaction dynamics between the isolated flavonoids and tyrosinase. The analysis of various MD parameters revealed consistent trajectories for the tested compounds, with compound 5 demonstrating notable energy equilibration. Strong hydrogen bonding interactions were observed between the flavonoids and the tyrosinase active site. The results of interaction energy calculations showed a balanced interaction mediated by hydrophobic interactions, with compound 5 exhibiting the lowest interaction energies. Additionally, the findings from MM/PBSA analysis demonstrated the lowest binding free energy for compound 5. Moreover, the in vitro tyrosinase inhibition assay revealed notable discrepancies among the studied flavonoids. Particularly, compound 5 demonstrated the most pronounced anti-tyrosinase activity, as evidenced by its lowest IC50 value. This experimental outcome is consistent with the results of computational predictions. Therefore, flavonoids of A. graecorum might be valuable for the development of tyrosinase inhibitors.

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来源期刊
ACS Omega
ACS Omega Chemical Engineering-General Chemical Engineering
CiteScore
6.60
自引率
4.90%
发文量
3945
审稿时长
2.4 months
期刊介绍: ACS Omega is an open-access global publication for scientific articles that describe new findings in chemistry and interfacing areas of science, without any perceived evaluation of immediate impact.
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