马铃薯块茎亲缘植物之一 Solanum mochiquense 的完整叶绿体基因组序列。

IF 0.5 4区 生物学 Q4 GENETICS & HEREDITY
Mitochondrial DNA. Part B, Resources Pub Date : 2024-11-21 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2432357
Tae-Ho Park
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引用次数: 0

摘要

Solanum mochiquense 是属于茄科的野生块茎茄属植物之一。本研究利用 Illumina 测序技术完成了该物种的叶绿体基因组序列。叶绿体基因组总长度为 155,547 bp,GC 含量为 37.87%。它包括一个大的单拷贝(LSC)区(85,941 bp)、一个小的单拷贝(SSC)区(18,382 bp)和两个倒置重复区(IRa 和 IRb)(25,612 bp)。此外,基因组中还发现了 158 个功能基因,包括 105 个蛋白质编码基因、8 个核糖体 RNA 基因和 45 个转运 RNA 基因。系统进化分析表明,S. mochiquense 与包括栽培马铃薯(S. tuberosum)在内的其他茄科植物同属一个大支系。这项研究为今后马铃薯和其他茄科植物的育种和进化研究提供了有用的基因组信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Complete chloroplast genome sequence of Solanum mochiquense, one of the tuber-bearing potato relatives.

Solanum mochiquense is one of the wild tuber-bearing Solanum species belonging to the Solanaceae family. In this study, the chloroplast genome sequence of the species was completed with Illumina sequencing technology. The total length of the chloroplast genome is 155,547 bp with a GC content of 37.87%. It comprises a large single copy (LSC) region of 85,941 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,612 bp. Additionally, 158 functional genes in the genome were identified, including 105 protein-coding genes, eight ribosomal RNA genes, and 45 transfer RNA genes. Phylogenetic analysis revealed that S. mochiquense is grouped into a large clade with other Solanum species including cultivated potatoes (S. tuberosum). This study provides useful genomic information for future breeding and evolutionary studies of S. mochiquense and other Solanum species.

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来源期刊
Mitochondrial DNA. Part B, Resources
Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
1.30
自引率
20.00%
发文量
670
期刊介绍: This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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