{"title":"马铃薯块茎亲缘植物之一 Solanum mochiquense 的完整叶绿体基因组序列。","authors":"Tae-Ho Park","doi":"10.1080/23802359.2024.2432357","DOIUrl":null,"url":null,"abstract":"<p><p><i>Solanum mochiquense</i> is one of the wild tuber-bearing <i>Solanum</i> species belonging to the Solanaceae family. In this study, the chloroplast genome sequence of the species was completed with Illumina sequencing technology. The total length of the chloroplast genome is 155,547 bp with a GC content of 37.87%. It comprises a large single copy (LSC) region of 85,941 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,612 bp. Additionally, 158 functional genes in the genome were identified, including 105 protein-coding genes, eight ribosomal RNA genes, and 45 transfer RNA genes. Phylogenetic analysis revealed that <i>S. mochiquense</i> is grouped into a large clade with other <i>Solanum</i> species including cultivated potatoes (<i>S. tuberosum</i>). This study provides useful genomic information for future breeding and evolutionary studies of <i>S. mochiquense</i> and other <i>Solanum</i> species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"9 11","pages":"1586-1591"},"PeriodicalIF":0.5000,"publicationDate":"2024-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11583358/pdf/","citationCount":"0","resultStr":"{\"title\":\"Complete chloroplast genome sequence of <i>Solanum mochiquense</i>, one of the tuber-bearing potato relatives.\",\"authors\":\"Tae-Ho Park\",\"doi\":\"10.1080/23802359.2024.2432357\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Solanum mochiquense</i> is one of the wild tuber-bearing <i>Solanum</i> species belonging to the Solanaceae family. In this study, the chloroplast genome sequence of the species was completed with Illumina sequencing technology. The total length of the chloroplast genome is 155,547 bp with a GC content of 37.87%. It comprises a large single copy (LSC) region of 85,941 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,612 bp. Additionally, 158 functional genes in the genome were identified, including 105 protein-coding genes, eight ribosomal RNA genes, and 45 transfer RNA genes. Phylogenetic analysis revealed that <i>S. mochiquense</i> is grouped into a large clade with other <i>Solanum</i> species including cultivated potatoes (<i>S. tuberosum</i>). This study provides useful genomic information for future breeding and evolutionary studies of <i>S. mochiquense</i> and other <i>Solanum</i> species.</p>\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":\"9 11\",\"pages\":\"1586-1591\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-11-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11583358/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2432357\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2432357","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
Complete chloroplast genome sequence of Solanum mochiquense, one of the tuber-bearing potato relatives.
Solanum mochiquense is one of the wild tuber-bearing Solanum species belonging to the Solanaceae family. In this study, the chloroplast genome sequence of the species was completed with Illumina sequencing technology. The total length of the chloroplast genome is 155,547 bp with a GC content of 37.87%. It comprises a large single copy (LSC) region of 85,941 bp, a small single copy (SSC) region of 18,382 bp, and two inverted repeat regions (IRa and IRb) of 25,612 bp. Additionally, 158 functional genes in the genome were identified, including 105 protein-coding genes, eight ribosomal RNA genes, and 45 transfer RNA genes. Phylogenetic analysis revealed that S. mochiquense is grouped into a large clade with other Solanum species including cultivated potatoes (S. tuberosum). This study provides useful genomic information for future breeding and evolutionary studies of S. mochiquense and other Solanum species.
期刊介绍:
This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.