Chi-Ching Tsang, Chenyang Zhao, Yueh Liu, Ken P K Lin, James Y M Tang, Kar-On Cheng, Franklin W N Chow, Weiming Yao, Ka-Fai Chan, Sharon N L Poon, Kelly Y C Wong, Lianyi Zhou, Oscar T N Mak, Jeremy C Y Lee, Suhui Zhao, Antonio H Y Ngan, Alan K L Wu, Kitty S C Fung, Tak-Lun Que, Jade L L Teng, Dirk Schnieders, Siu-Ming Yiu, Susanna K P Lau, Patrick C Y Woo
{"title":"基于人工智能的图像识别自动识别临床上重要的曲霉菌种:概念验证研究。","authors":"Chi-Ching Tsang, Chenyang Zhao, Yueh Liu, Ken P K Lin, James Y M Tang, Kar-On Cheng, Franklin W N Chow, Weiming Yao, Ka-Fai Chan, Sharon N L Poon, Kelly Y C Wong, Lianyi Zhou, Oscar T N Mak, Jeremy C Y Lee, Suhui Zhao, Antonio H Y Ngan, Alan K L Wu, Kitty S C Fung, Tak-Lun Que, Jade L L Teng, Dirk Schnieders, Siu-Ming Yiu, Susanna K P Lau, Patrick C Y Woo","doi":"10.1080/22221751.2024.2434573","DOIUrl":null,"url":null,"abstract":"<p><p>While morphological examination is the most widely used for <i>Aspergillus</i> identification in clinical laboratories, PCR-sequencing and MALDI-TOF MS are emerging technologies in more financially-competent laboratories. However, mycological expertise, molecular biologists and/or expensive equipment are needed for these. Recently, artificial intelligence (AI), especially image recognition, is being increasingly employed in medicine for fast and automated disease diagnosis. We explored the potential utility of AI in identifying <i>Aspergillus</i> species. In this proof-of-concept study, using 2813, 2814 and 1240 images from four clinically important <i>Aspergillus</i> species for training, validation and testing, respectively; the performances and accuracies of automatic <i>Aspergillus</i> identification using colonial images by three different convolutional neural networks were evaluated. Results demonstrated that ResNet-18 outperformed Inception-v3 and DenseNet-121 and is the best algorithm of choice because it made the fewest misidentifications (<i>n</i> = 8) and possessed the highest testing accuracy (99.35%). Images showing more unique morphological features were more accurately identified. AI-based image recognition using colonial images is a promising technology for <i>Aspergillus</i> identification. Given its short turn-around-time, minimal demand of expertise, low reagent/equipment costs and user-friendliness, it has the potential to serve as a routine laboratory diagnostic tool after the database is further expanded.</p>","PeriodicalId":11602,"journal":{"name":"Emerging Microbes & Infections","volume":" ","pages":"2434573"},"PeriodicalIF":8.4000,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11632928/pdf/","citationCount":"0","resultStr":"{\"title\":\"Automatic identification of clinically important <i>Aspergillus</i> species by artificial intelligence-based image recognition: proof-of-concept study.\",\"authors\":\"Chi-Ching Tsang, Chenyang Zhao, Yueh Liu, Ken P K Lin, James Y M Tang, Kar-On Cheng, Franklin W N Chow, Weiming Yao, Ka-Fai Chan, Sharon N L Poon, Kelly Y C Wong, Lianyi Zhou, Oscar T N Mak, Jeremy C Y Lee, Suhui Zhao, Antonio H Y Ngan, Alan K L Wu, Kitty S C Fung, Tak-Lun Que, Jade L L Teng, Dirk Schnieders, Siu-Ming Yiu, Susanna K P Lau, Patrick C Y Woo\",\"doi\":\"10.1080/22221751.2024.2434573\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>While morphological examination is the most widely used for <i>Aspergillus</i> identification in clinical laboratories, PCR-sequencing and MALDI-TOF MS are emerging technologies in more financially-competent laboratories. 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Automatic identification of clinically important Aspergillus species by artificial intelligence-based image recognition: proof-of-concept study.
While morphological examination is the most widely used for Aspergillus identification in clinical laboratories, PCR-sequencing and MALDI-TOF MS are emerging technologies in more financially-competent laboratories. However, mycological expertise, molecular biologists and/or expensive equipment are needed for these. Recently, artificial intelligence (AI), especially image recognition, is being increasingly employed in medicine for fast and automated disease diagnosis. We explored the potential utility of AI in identifying Aspergillus species. In this proof-of-concept study, using 2813, 2814 and 1240 images from four clinically important Aspergillus species for training, validation and testing, respectively; the performances and accuracies of automatic Aspergillus identification using colonial images by three different convolutional neural networks were evaluated. Results demonstrated that ResNet-18 outperformed Inception-v3 and DenseNet-121 and is the best algorithm of choice because it made the fewest misidentifications (n = 8) and possessed the highest testing accuracy (99.35%). Images showing more unique morphological features were more accurately identified. AI-based image recognition using colonial images is a promising technology for Aspergillus identification. Given its short turn-around-time, minimal demand of expertise, low reagent/equipment costs and user-friendliness, it has the potential to serve as a routine laboratory diagnostic tool after the database is further expanded.
期刊介绍:
Emerging Microbes & Infections is a peer-reviewed, open-access journal dedicated to publishing research at the intersection of emerging immunology and microbiology viruses.
The journal's mission is to share information on microbes and infections, particularly those gaining significance in both biological and clinical realms due to increased pathogenic frequency. Emerging Microbes & Infections is committed to bridging the scientific gap between developed and developing countries.
This journal addresses topics of critical biological and clinical importance, including but not limited to:
- Epidemic surveillance
- Clinical manifestations
- Diagnosis and management
- Cellular and molecular pathogenesis
- Innate and acquired immune responses between emerging microbes and their hosts
- Drug discovery
- Vaccine development research
Emerging Microbes & Infections invites submissions of original research articles, review articles, letters, and commentaries, fostering a platform for the dissemination of impactful research in the field.