利用生物信息学分析鉴定乳腺癌中与 hsa_circ_0001314 相关的 ceRNA 网络

Yuge Ma, Bing Zhang, Liping Wang, Wei Rong, Ting Liu
{"title":"利用生物信息学分析鉴定乳腺癌中与 hsa_circ_0001314 相关的 ceRNA 网络","authors":"Yuge Ma,&nbsp;Bing Zhang,&nbsp;Liping Wang,&nbsp;Wei Rong,&nbsp;Ting Liu","doi":"10.1155/ijog/4668425","DOIUrl":null,"url":null,"abstract":"<p>Circular RNA (circRNA) serves as a competitive endogenous RNA (ceRNA) that plays a pivotal role in the initiation and progression of breast cancer (BC). However, compared to other noncoding RNAs (ncRNAs), research on circRNA in BC is still in its infancy. Through the analysis of circRNA datasets in the GEO database, hsa_circ_0001314, which is upregulated in BC, was selected as the focus of this study. RT-qPCR analysis showed that hsa_circ_0001314 was significantly upregulated in BC tissues and cells. Subsequently, the biological functions of hsa_circ_0001314 in BC cells were examined through CCK-8, wound healing, transwell invasion, and flow cytometry analyses. The research demonstrated that knocking down the expression level of hsa_circ_0001314 significantly inhibited cell proliferation, migration, and invasion abilities while notably promoting cell apoptosis. Bioinformatics methods were used to predict downstream miRNAs and mRNAs that may interact with hsa_circ_0001314, constructing a ceRNA regulatory network related to hsa_circ_0001314. RT-qPCR confirmed that hsa_circ_0001314 functions as a sponge for hsa-miR-548aj-3p, competitively binding to hsa-miR-548aj-3p to activate the MAPK signaling pathway and regulate the expression of MAPK8 and MAP3K1. The findings uncover the potential of hsa_circ_0001314 as a novel prognostic biomarker and therapeutic target for BC patients.</p>","PeriodicalId":55239,"journal":{"name":"Comparative and Functional Genomics","volume":"2024 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1155/ijog/4668425","citationCount":"0","resultStr":"{\"title\":\"Identification of the hsa_circ_0001314-Related ceRNA Network in Breast Cancer With Bioinformatics Analysis\",\"authors\":\"Yuge Ma,&nbsp;Bing Zhang,&nbsp;Liping Wang,&nbsp;Wei Rong,&nbsp;Ting Liu\",\"doi\":\"10.1155/ijog/4668425\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>Circular RNA (circRNA) serves as a competitive endogenous RNA (ceRNA) that plays a pivotal role in the initiation and progression of breast cancer (BC). However, compared to other noncoding RNAs (ncRNAs), research on circRNA in BC is still in its infancy. Through the analysis of circRNA datasets in the GEO database, hsa_circ_0001314, which is upregulated in BC, was selected as the focus of this study. RT-qPCR analysis showed that hsa_circ_0001314 was significantly upregulated in BC tissues and cells. Subsequently, the biological functions of hsa_circ_0001314 in BC cells were examined through CCK-8, wound healing, transwell invasion, and flow cytometry analyses. The research demonstrated that knocking down the expression level of hsa_circ_0001314 significantly inhibited cell proliferation, migration, and invasion abilities while notably promoting cell apoptosis. Bioinformatics methods were used to predict downstream miRNAs and mRNAs that may interact with hsa_circ_0001314, constructing a ceRNA regulatory network related to hsa_circ_0001314. RT-qPCR confirmed that hsa_circ_0001314 functions as a sponge for hsa-miR-548aj-3p, competitively binding to hsa-miR-548aj-3p to activate the MAPK signaling pathway and regulate the expression of MAPK8 and MAP3K1. The findings uncover the potential of hsa_circ_0001314 as a novel prognostic biomarker and therapeutic target for BC patients.</p>\",\"PeriodicalId\":55239,\"journal\":{\"name\":\"Comparative and Functional Genomics\",\"volume\":\"2024 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-11-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1155/ijog/4668425\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Comparative and Functional Genomics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1155/ijog/4668425\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Comparative and Functional Genomics","FirstCategoryId":"1085","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1155/ijog/4668425","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

环状 RNA(circRNA)是一种竞争性内源性 RNA(ceRNA),在乳腺癌(BC)的发生和发展过程中起着关键作用。然而,与其他非编码RNA(ncRNA)相比,有关乳腺癌中circRNA的研究仍处于起步阶段。通过分析 GEO 数据库中的 circRNA 数据集,本研究选择了在 BC 中上调的 hsa_circ_0001314。RT-qPCR 分析表明,hsa_circ_0001314 在 BC 组织和细胞中显著上调。随后,通过CCK-8、伤口愈合、经孔侵袭和流式细胞仪分析,研究了hsa_circ_0001314在BC细胞中的生物学功能。研究表明,敲低 hsa_circ_0001314 的表达水平会显著抑制细胞的增殖、迁移和侵袭能力,同时明显促进细胞凋亡。研究人员利用生物信息学方法预测了可能与hsa_circ_0001314相互作用的下游miRNA和mRNA,构建了与hsa_circ_0001314相关的ceRNA调控网络。RT-qPCR证实,hsa_circ_0001314可作为hsa-miR-548aj-3p的海绵,与hsa-miR-548aj-3p竞争性结合,激活MAPK信号通路,调控MAPK8和MAP3K1的表达。这些发现揭示了 hsa_circ_0001314 作为一种新型预后生物标志物和治疗靶点的潜力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification of the hsa_circ_0001314-Related ceRNA Network in Breast Cancer With Bioinformatics Analysis

Identification of the hsa_circ_0001314-Related ceRNA Network in Breast Cancer With Bioinformatics Analysis

Circular RNA (circRNA) serves as a competitive endogenous RNA (ceRNA) that plays a pivotal role in the initiation and progression of breast cancer (BC). However, compared to other noncoding RNAs (ncRNAs), research on circRNA in BC is still in its infancy. Through the analysis of circRNA datasets in the GEO database, hsa_circ_0001314, which is upregulated in BC, was selected as the focus of this study. RT-qPCR analysis showed that hsa_circ_0001314 was significantly upregulated in BC tissues and cells. Subsequently, the biological functions of hsa_circ_0001314 in BC cells were examined through CCK-8, wound healing, transwell invasion, and flow cytometry analyses. The research demonstrated that knocking down the expression level of hsa_circ_0001314 significantly inhibited cell proliferation, migration, and invasion abilities while notably promoting cell apoptosis. Bioinformatics methods were used to predict downstream miRNAs and mRNAs that may interact with hsa_circ_0001314, constructing a ceRNA regulatory network related to hsa_circ_0001314. RT-qPCR confirmed that hsa_circ_0001314 functions as a sponge for hsa-miR-548aj-3p, competitively binding to hsa-miR-548aj-3p to activate the MAPK signaling pathway and regulate the expression of MAPK8 and MAP3K1. The findings uncover the potential of hsa_circ_0001314 as a novel prognostic biomarker and therapeutic target for BC patients.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Comparative and Functional Genomics
Comparative and Functional Genomics 生物-生化与分子生物学
自引率
0.00%
发文量
0
审稿时长
2 months
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信