淡水虾虎鱼 Rhinogobius shennongensis（鲈形目，戈壁鱼科）的完整线粒体基因组：基因组特征和系统发育分析。

IF 0.5 4区生物学 Q4 GENETICS & HEREDITY

Mitochondrial DNA. Part B, Resources Pub Date : 2024-11-18 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2429649

Xiao Jiang Chen, Lin Song, Xing Peng Han, Quan Wang

{"title":"淡水虾虎鱼 Rhinogobius shennongensis（鲈形目，戈壁鱼科）的完整线粒体基因组：基因组特征和系统发育分析。","authors":"Xiao Jiang Chen, Lin Song, Xing Peng Han, Quan Wang","doi":"10.1080/23802359.2024.2429649","DOIUrl":null,"url":null,"abstract":"In this study, we present the complete mitochondrial genome of Rhinogobius shennongensis, sequenced using the Illumina HiSeq platform. The result is a circular mitogenome of 16,500 base pairs (bp) with a pronounced A + T nucleotide bias. Phylogenetic analysis was conducted using both Bayesian inference (BI) and maximum-likelihood (ML) methods, utilizing the complete mitochondrial genomes of R. shennongensis and 19 additional Rhinogobius species. The analysis indicated a close mitochondrial relationship between R. maculagenys and R. shennongensis. This research not only enriches genetic resources but also supports phylogenetic studies within the genus Rhinogobius. To further clarify evolutionary dynamics, additional mitochondrial genome sequencing of other Rhinogobius species is essential.","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"9 11","pages":"1554-1558"},"PeriodicalIF":0.5000,"publicationDate":"2024-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11574976/pdf/","citationCount":"0","resultStr":"{\"title\":\"Complete mitochondrial genome of freshwater goby Rhinogobius shennongensis (Perciformes, Gobiidae): genome characterization and phylogenetic analysis.\",\"authors\":\"Xiao Jiang Chen, Lin Song, Xing Peng Han, Quan Wang\",\"doi\":\"10.1080/23802359.2024.2429649\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In this study, we present the complete mitochondrial genome of Rhinogobius shennongensis, sequenced using the Illumina HiSeq platform. The result is a circular mitogenome of 16,500 base pairs (bp) with a pronounced A + T nucleotide bias. Phylogenetic analysis was conducted using both Bayesian inference (BI) and maximum-likelihood (ML) methods, utilizing the complete mitochondrial genomes of R. shennongensis and 19 additional Rhinogobius species. The analysis indicated a close mitochondrial relationship between R. maculagenys and R. shennongensis. This research not only enriches genetic resources but also supports phylogenetic studies within the genus Rhinogobius. To further clarify evolutionary dynamics, additional mitochondrial genome sequencing of other Rhinogobius species is essential.\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":\"9 11\",\"pages\":\"1554-1558\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-11-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11574976/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2429649\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2429649","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}

引用次数: 0

摘要

本研究利用 Illumina HiSeq 平台对神农架犀牛的完整线粒体基因组进行了测序。结果是一个 16,500 碱基对（bp）的环状线粒体基因组，具有明显的 A + T 核苷酸偏倚。利用神农架犀牛和另外 19 个犀牛物种的完整线粒体基因组，采用贝叶斯推断法（BI）和最大似然法（ML）进行了系统发育分析。分析表明，R. maculagenys 和 R. shennongensis 的线粒体关系密切。这项研究不仅丰富了遗传资源，而且为犀牛属的系统发育研究提供了支持。为了进一步明确进化动态，有必要对其他犀牛物种进行更多的线粒体基因组测序。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

查看原文本刊更多论文

Complete mitochondrial genome of freshwater goby Rhinogobius shennongensis (Perciformes, Gobiidae): genome characterization and phylogenetic analysis.

In this study, we present the complete mitochondrial genome of Rhinogobius shennongensis, sequenced using the Illumina HiSeq platform. The result is a circular mitogenome of 16,500 base pairs (bp) with a pronounced A + T nucleotide bias. Phylogenetic analysis was conducted using both Bayesian inference (BI) and maximum-likelihood (ML) methods, utilizing the complete mitochondrial genomes of R. shennongensis and 19 additional Rhinogobius species. The analysis indicated a close mitochondrial relationship between R. maculagenys and R. shennongensis. This research not only enriches genetic resources but also supports phylogenetic studies within the genus Rhinogobius. To further clarify evolutionary dynamics, additional mitochondrial genome sequencing of other Rhinogobius species is essential.

求助全文

通过发布文献求助，成功后即可免费获取论文全文。去求助

来源期刊

Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology

CiteScore

1.30

自引率

20.00%

发文量

670

期刊介绍： This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.