富马酸和富马酸烷基酯的结构、内聚能和氢键合作性:来自实验和理论的启示

IF 3.2 2区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY
António O. L. Évora, Daniel F. Valente-Matias, Carlos E. S. Bernardes*, Cláudio M. Lousada, M. Fátima M. Piedade, Matteo Lusi, Hermínio P. Diogo and Manuel E. Minas da Piedade*, 
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引用次数: 0

摘要

富马酸和富马酸烷基酯是一系列结构相关的化合物,具有广泛的潜在或有效治疗用途。本研究对由富马酸(FA)、富马酸单甲酯(MMF)、富马酸二甲酯(DMF)、富马酸单乙酯(MEF)和富马酸二乙酯(DEF)组成的系列进行了研究,以解决以下主要问题:由于分子结构的系统性差异而可能建立的 OH-O 氢键的数量对分子堆积和晶格能的影响如何?在形成由 OH-O 氢键支撑的无限 1D 链时,是否有证据表明氢键会协同加强?在合理化或预测分子有机固体的晶体结构和物理性质时,最先进的力场和周期 DFT 程序能在多大程度上预测这一系列相关分子的结构和能量特征?通过将各种实验(X 射线衍射、拉曼光谱、DSC、卡尔维滴升华量热法)和理论(量子力学、分子动力学模拟)方法的结果结合起来,我们发现:(i) 在所有情况下,分子堆积都会导致层状固体,其中每一层都由通过 C-H-O 相互作用相互连接的一维链图案组成。(ii) 一维排列由两个主要图案决定:R22(8) 羧基二聚体(通常存在于单-双-正烷基羧酸中)和交错的 CH3-H3C 合子(存在于单-正烷基羧酸和正烷烃中)。这导致形成在结构上相互隔离的羧基-羧基和烷基-烷基结构域。(iii) 以升华焓(ΔsubHmo)衡量的晶格能根据 FA > MMF ∼ MEF > DMF ∼ DEF 而变化,并与结构中存在的 OH-O 氢键数量呈线性相关。(iv) 与 MMF 和 MEF 相比,FA 的升华焓较大,这与 OH-O 氢键的数量有关,但似乎与它们各自的强度无关。对二聚体 FA、MMF 和 MEF 物种的 O-O 距离和 C═O 伸展频率以及理论计算的解离能的研究表明,FA 中的 OH-O 相互作用比 MMF 和 MEF 中的要弱。因此,与 MMF 和 MEF 相比,本研究没有证据表明,由于羧酸二聚体存在无限的一维链,FA 中的 OH-O 键会协同加强。(v) 研究还发现,ΔsubHmo 与密度或 Kitaigorodski 堆积指数等紧密性指标之间没有明显的联系。最后,(vi) MD 模拟和周期 DFT 计算都能再现上述 ΔsubHmo 趋势,并捕捉到本文研究的晶体材料家族的主要结构特征。就准确性而言,为这类特殊化合物开发的力场方法的总体性能更好。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Structure, Cohesion Energetics, and Hydrogen Bonding Cooperativity in Fumaric Acid and Alkyl Fumarates: Insights from Experiment and Theory

Structure, Cohesion Energetics, and Hydrogen Bonding Cooperativity in Fumaric Acid and Alkyl Fumarates: Insights from Experiment and Theory

Fumaric acid and alkyl fumarates are a family of structurally related compounds with a wide spectrum of potential or effective therapeutic applications. The series consisting of fumaric acid (FA), monomethyl fumarate (MMF), dimethyl fumarate (DMF), monoethyl fumarate (MEF), and diethyl fumarate (DEF) was studied in this work to address the following main questions: how does the number of OH···O hydrogen bonds that may be established due to systematic differences in molecular structure impacts on the molecular packing and lattice energetics? Is there evidence of a cooperative hydrogen bond strengthening when infinite 1D chains sustained by OH···O hydrogen bonds are formed? How well can the structural and energetic features of this series of related molecules be predicted by state-of-the art force field and periodic DFT procedures that are used in the rationalization or prediction of crystal structures and physical properties of molecular organic solids? By combining results from a variety of experimental (X-ray diffraction, Raman spectroscopy, DSC, Calvet drop-sublimation calorimetry) and theoretical (quantum mechanical, molecular dynamics simulations) methods, it was found that (i) in all cases, the molecular packing leads to layered solids, where each layer consists of 1D chain motifs linked to each other through C–H···O interactions. (ii) The 1D arrangements are determined by two main motifs: the R22(8) carboxyl dimer, typically found in mono- and di-n-alkyl carboxylic acids, and the staggered CH3···H3C synthon, which is present in mono-n-alkyl carboxylic acids and n-alkanes. This leads to the formation of carboxyl–carboxyl and alkyl–alkyl domains that are structurally isolated from each other. (iii) The lattice energy, as measured by the enthalpy of sublimation (ΔsubHmo), varies according to FA > MMF ∼ MEF > DMF ∼ DEF and is linearly correlated with the number of OH···O hydrogen bonds present in the structures. (iv) The larger enthalpy of sublimation of FA compared to MMF and MEF is linked to the number of OH···O hydrogen bonds but does not seem to be related to their individual strength. Examination of O···O distance and C═O stretching frequency as well as theoretically computed dissociation energies of dimeric FA, MMF, and MEF species suggests that the OH···O interaction is weaker in FA than in MMF and MEF. As such, the present study showed no evidence of a cooperative OH···O bond strengthening in FA, relative to MMF and MEF, due to the presence of infinite 1D chains sustained by carboxylic acid dimers. (v) No evident connection between ΔsubHmo and compactness indicators such as density or Kitaigorodski packing index was also found. Finally, (vi) MD simulations and periodic DFT calculations were both able to reproduce the above-mentioned ΔsubHmo trend and capture the main structural features of the family of crystalline materials studied in this work. In terms of accuracy, better overall performance was observed for the force field method developed for this particular type of compounds.

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来源期刊
Crystal Growth & Design
Crystal Growth & Design 化学-材料科学:综合
CiteScore
6.30
自引率
10.50%
发文量
650
审稿时长
1.9 months
期刊介绍: The aim of Crystal Growth & Design is to stimulate crossfertilization of knowledge among scientists and engineers working in the fields of crystal growth, crystal engineering, and the industrial application of crystalline materials. Crystal Growth & Design publishes theoretical and experimental studies of the physical, chemical, and biological phenomena and processes related to the design, growth, and application of crystalline materials. Synergistic approaches originating from different disciplines and technologies and integrating the fields of crystal growth, crystal engineering, intermolecular interactions, and industrial application are encouraged.
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