{"title":"粒子插入和元素替换的机器学习代用模型。","authors":"Ryosuke Jinnouchi","doi":"10.1063/5.0240275","DOIUrl":null,"url":null,"abstract":"<p><p>Two machine-learning-aided thermodynamic integration schemes to compute the chemical potentials of atoms and molecules have been developed and compared. One is the particle insertion method, and the other combines particle insertion with element substitution. In the former method, the species is gradually inserted into the liquid and its chemical potential is computed. In the latter method, after the particle insertion, the inserted species is substituted with another species, and the chemical potential of this new species is computed. In both methods, the thermodynamic integrations are conducted using machine-learned potentials trained on first-principles datasets. The errors of the machine-learned surrogate models are further corrected by performing thermodynamic integrations from the machine-learned potentials to the first-principles potentials, accurately providing the first-principles chemical potentials. These two methods are applied to compute the real potentials of proton, alkali metal cations, and halide anions in water. The applications indicate that these two entirely different thermodynamic pathways yield identical real potentials within statistical error bars, demonstrating that both methods provide reproducible real potentials. The computed real potentials and solvation structures are also in good agreement with past experiments and simulations. These results indicate that machine-learning surrogate models enabling particle insertion and element substitution provide a precise method for determining the chemical potentials of atoms and molecules.</p>","PeriodicalId":15313,"journal":{"name":"Journal of Chemical Physics","volume":"161 19","pages":""},"PeriodicalIF":3.1000,"publicationDate":"2024-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Machine-learning surrogate models for particle insertions and element substitutions.\",\"authors\":\"Ryosuke Jinnouchi\",\"doi\":\"10.1063/5.0240275\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Two machine-learning-aided thermodynamic integration schemes to compute the chemical potentials of atoms and molecules have been developed and compared. One is the particle insertion method, and the other combines particle insertion with element substitution. In the former method, the species is gradually inserted into the liquid and its chemical potential is computed. In the latter method, after the particle insertion, the inserted species is substituted with another species, and the chemical potential of this new species is computed. In both methods, the thermodynamic integrations are conducted using machine-learned potentials trained on first-principles datasets. The errors of the machine-learned surrogate models are further corrected by performing thermodynamic integrations from the machine-learned potentials to the first-principles potentials, accurately providing the first-principles chemical potentials. These two methods are applied to compute the real potentials of proton, alkali metal cations, and halide anions in water. The applications indicate that these two entirely different thermodynamic pathways yield identical real potentials within statistical error bars, demonstrating that both methods provide reproducible real potentials. The computed real potentials and solvation structures are also in good agreement with past experiments and simulations. These results indicate that machine-learning surrogate models enabling particle insertion and element substitution provide a precise method for determining the chemical potentials of atoms and molecules.</p>\",\"PeriodicalId\":15313,\"journal\":{\"name\":\"Journal of Chemical Physics\",\"volume\":\"161 19\",\"pages\":\"\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2024-11-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Physics\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1063/5.0240275\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Physics","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1063/5.0240275","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Machine-learning surrogate models for particle insertions and element substitutions.
Two machine-learning-aided thermodynamic integration schemes to compute the chemical potentials of atoms and molecules have been developed and compared. One is the particle insertion method, and the other combines particle insertion with element substitution. In the former method, the species is gradually inserted into the liquid and its chemical potential is computed. In the latter method, after the particle insertion, the inserted species is substituted with another species, and the chemical potential of this new species is computed. In both methods, the thermodynamic integrations are conducted using machine-learned potentials trained on first-principles datasets. The errors of the machine-learned surrogate models are further corrected by performing thermodynamic integrations from the machine-learned potentials to the first-principles potentials, accurately providing the first-principles chemical potentials. These two methods are applied to compute the real potentials of proton, alkali metal cations, and halide anions in water. The applications indicate that these two entirely different thermodynamic pathways yield identical real potentials within statistical error bars, demonstrating that both methods provide reproducible real potentials. The computed real potentials and solvation structures are also in good agreement with past experiments and simulations. These results indicate that machine-learning surrogate models enabling particle insertion and element substitution provide a precise method for determining the chemical potentials of atoms and molecules.
期刊介绍:
The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance.
Topical coverage includes:
Theoretical Methods and Algorithms
Advanced Experimental Techniques
Atoms, Molecules, and Clusters
Liquids, Glasses, and Crystals
Surfaces, Interfaces, and Materials
Polymers and Soft Matter
Biological Molecules and Networks.