利用大型语言模型和磁共振成像分割对腰椎疾病进行分类。

IF 3.3 3区 医学 Q2 MEDICAL INFORMATICS
Rongpeng Dong, Xueliang Cheng, Mingyang Kang, Yang Qu
{"title":"利用大型语言模型和磁共振成像分割对腰椎疾病进行分类。","authors":"Rongpeng Dong, Xueliang Cheng, Mingyang Kang, Yang Qu","doi":"10.1186/s12911-024-02740-8","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong>MRI is critical for diagnosing lumbar spine disorders but its complexity challenges diagnostic accuracy. This study proposes a BERT-based large language model (LLM) to enhance precision in classifying lumbar spine disorders through the integration of MRI data, textual reports, and numerical measurements.</p><p><strong>Methods: </strong>The segmentation quality of MRI data is evaluated using dice coefficients (cut-off: 0.92) and intersection over union (IoU) metrics (cut-off: 0.88) to ensure precise anatomical feature extraction. The CNN extracts key lumbar spine features, such as lumbar lordotic angle (LLA) and disc heights, which are tokenized as direct scalar values representing positional relationships. A data source of 28,065 patients with various disorders, including degenerative disc disease, spinal stenosis, and spondylolisthesis, is used to establish diagnostic standards. These standards are refined through post-CNN processing of MRI texture features. The BERT-based spinal LLM model integrates these CNN-extracted MRI features and numerical values through early fusion layers.</p><p><strong>Results: </strong>Segmentation analysis illustrate various lumbar spine disorders and their anatomical changes. The model achieved high performance, with all key metrics nearing 0.9, demonstrating its effectiveness in classifying conditions like spondylolisthesis, herniated disc, and spinal stenosis. External validation further confirmed the model's generalizability across different populations. External validation on 514 expert-validated MRI cases further confirms the model's clinical relevance and generalizability. The BERT-based model classifies 61 combinations of lumbar spine disorders.</p><p><strong>Conclusions: </strong>The BERT-based spinal LLM significantly improves the precision of lumbar spine disorder classification, supporting accurate diagnosis and treatment planning.</p>","PeriodicalId":9340,"journal":{"name":"BMC Medical Informatics and Decision Making","volume":"24 1","pages":"343"},"PeriodicalIF":3.3000,"publicationDate":"2024-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11571895/pdf/","citationCount":"0","resultStr":"{\"title\":\"Classification of lumbar spine disorders using large language models and MRI segmentation.\",\"authors\":\"Rongpeng Dong, Xueliang Cheng, Mingyang Kang, Yang Qu\",\"doi\":\"10.1186/s12911-024-02740-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>MRI is critical for diagnosing lumbar spine disorders but its complexity challenges diagnostic accuracy. This study proposes a BERT-based large language model (LLM) to enhance precision in classifying lumbar spine disorders through the integration of MRI data, textual reports, and numerical measurements.</p><p><strong>Methods: </strong>The segmentation quality of MRI data is evaluated using dice coefficients (cut-off: 0.92) and intersection over union (IoU) metrics (cut-off: 0.88) to ensure precise anatomical feature extraction. The CNN extracts key lumbar spine features, such as lumbar lordotic angle (LLA) and disc heights, which are tokenized as direct scalar values representing positional relationships. A data source of 28,065 patients with various disorders, including degenerative disc disease, spinal stenosis, and spondylolisthesis, is used to establish diagnostic standards. These standards are refined through post-CNN processing of MRI texture features. The BERT-based spinal LLM model integrates these CNN-extracted MRI features and numerical values through early fusion layers.</p><p><strong>Results: </strong>Segmentation analysis illustrate various lumbar spine disorders and their anatomical changes. The model achieved high performance, with all key metrics nearing 0.9, demonstrating its effectiveness in classifying conditions like spondylolisthesis, herniated disc, and spinal stenosis. External validation further confirmed the model's generalizability across different populations. External validation on 514 expert-validated MRI cases further confirms the model's clinical relevance and generalizability. The BERT-based model classifies 61 combinations of lumbar spine disorders.</p><p><strong>Conclusions: </strong>The BERT-based spinal LLM significantly improves the precision of lumbar spine disorder classification, supporting accurate diagnosis and treatment planning.</p>\",\"PeriodicalId\":9340,\"journal\":{\"name\":\"BMC Medical Informatics and Decision Making\",\"volume\":\"24 1\",\"pages\":\"343\"},\"PeriodicalIF\":3.3000,\"publicationDate\":\"2024-11-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11571895/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"BMC Medical Informatics and Decision Making\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1186/s12911-024-02740-8\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MEDICAL INFORMATICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"BMC Medical Informatics and Decision Making","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1186/s12911-024-02740-8","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MEDICAL INFORMATICS","Score":null,"Total":0}
引用次数: 0

摘要

背景:磁共振成像是诊断腰椎疾病的关键,但其复杂性对诊断的准确性提出了挑战。本研究提出了一种基于 BERT 的大型语言模型(LLM),通过整合核磁共振成像数据、文本报告和数值测量来提高腰椎疾病分类的准确性:方法:使用骰子系数(临界值:0.92)和交集大于联合(IoU)指标(临界值:0.88)评估核磁共振成像数据的分割质量,以确保精确的解剖特征提取。CNN 可提取关键的腰椎特征,如腰椎前凸角 (LLA) 和椎间盘高度,这些特征被标记为代表位置关系的直接标量值。28,065 名患有各种疾病(包括椎间盘退行性病变、椎管狭窄和脊椎滑脱症)的患者的数据源被用来建立诊断标准。通过对核磁共振成像纹理特征的后 CNN 处理,这些标准得到了完善。基于 BERT 的脊柱 LLM 模型通过早期融合层整合了这些 CNN 提取的 MRI 特征和数值:结果:分割分析显示了各种腰椎疾病及其解剖变化。该模型取得了很高的性能,所有关键指标均接近 0.9,证明其在对脊柱滑脱症、椎间盘突出症和椎管狭窄症等病症进行分类时非常有效。外部验证进一步证实了该模型在不同人群中的通用性。对 514 个经专家验证的核磁共振成像病例进行的外部验证进一步证实了该模型的临床相关性和通用性。基于 BERT 的模型可对 61 种腰椎疾病组合进行分类:基于 BERT 的脊柱 LLM 显著提高了腰椎疾病分类的精确度,为准确诊断和治疗计划提供了支持。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Classification of lumbar spine disorders using large language models and MRI segmentation.

Background: MRI is critical for diagnosing lumbar spine disorders but its complexity challenges diagnostic accuracy. This study proposes a BERT-based large language model (LLM) to enhance precision in classifying lumbar spine disorders through the integration of MRI data, textual reports, and numerical measurements.

Methods: The segmentation quality of MRI data is evaluated using dice coefficients (cut-off: 0.92) and intersection over union (IoU) metrics (cut-off: 0.88) to ensure precise anatomical feature extraction. The CNN extracts key lumbar spine features, such as lumbar lordotic angle (LLA) and disc heights, which are tokenized as direct scalar values representing positional relationships. A data source of 28,065 patients with various disorders, including degenerative disc disease, spinal stenosis, and spondylolisthesis, is used to establish diagnostic standards. These standards are refined through post-CNN processing of MRI texture features. The BERT-based spinal LLM model integrates these CNN-extracted MRI features and numerical values through early fusion layers.

Results: Segmentation analysis illustrate various lumbar spine disorders and their anatomical changes. The model achieved high performance, with all key metrics nearing 0.9, demonstrating its effectiveness in classifying conditions like spondylolisthesis, herniated disc, and spinal stenosis. External validation further confirmed the model's generalizability across different populations. External validation on 514 expert-validated MRI cases further confirms the model's clinical relevance and generalizability. The BERT-based model classifies 61 combinations of lumbar spine disorders.

Conclusions: The BERT-based spinal LLM significantly improves the precision of lumbar spine disorder classification, supporting accurate diagnosis and treatment planning.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
7.20
自引率
5.70%
发文量
297
审稿时长
1 months
期刊介绍: BMC Medical Informatics and Decision Making is an open access journal publishing original peer-reviewed research articles in relation to the design, development, implementation, use, and evaluation of health information technologies and decision-making for human health.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信