{"title":"近似模型拟合中的数据质量:计算化学的视角。","authors":"Bun Chan, William Dawson, Takahito Nakajima","doi":"10.1021/acs.jctc.4c01063","DOIUrl":null,"url":null,"abstract":"<p><p>Empirical parametrization underpins many scientific methodologies including certain quantum-chemistry protocols [e.g., density functional theory (DFT), machine-learning (ML) models]. In some cases, the fitting requires a large amount of data, necessitating the use of data obtained using low-cost, and thus low-quality, means. Here we examine the effect of using low-quality data on the resulting method in the context of DFT methods. We use multiple G2/97 data sets of different qualities to fit the DFT-type methods. Encouragingly, this fitting can tolerate a relatively large proportion of low-quality fitting data, which may be attributed to the physical foundations of the DFT models and the use of a modest number of parameters. Further examination using \"ML-quality\" data shows that adding a large amount of low-quality data to a small number of high-quality ones may not offer tangible benefits. On the other hand, when the high-quality data is limited in scope, diversification by a modest amount of low-quality data improves the performance. Quantitatively, for parametrizing DFT (and perhaps also quantum-chemistry ML models), caution should be taken when more than 50% of the fitting set contains questionable data, and that the average error of the full set is more than 20 kJ mol<sup>-1</sup>. One may also follow the recently proposed transferability principles to ensure diversity in the fitting set.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":""},"PeriodicalIF":5.7000,"publicationDate":"2024-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Data Quality in the Fitting of Approximate Models: A Computational Chemistry Perspective.\",\"authors\":\"Bun Chan, William Dawson, Takahito Nakajima\",\"doi\":\"10.1021/acs.jctc.4c01063\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Empirical parametrization underpins many scientific methodologies including certain quantum-chemistry protocols [e.g., density functional theory (DFT), machine-learning (ML) models]. In some cases, the fitting requires a large amount of data, necessitating the use of data obtained using low-cost, and thus low-quality, means. Here we examine the effect of using low-quality data on the resulting method in the context of DFT methods. We use multiple G2/97 data sets of different qualities to fit the DFT-type methods. Encouragingly, this fitting can tolerate a relatively large proportion of low-quality fitting data, which may be attributed to the physical foundations of the DFT models and the use of a modest number of parameters. Further examination using \\\"ML-quality\\\" data shows that adding a large amount of low-quality data to a small number of high-quality ones may not offer tangible benefits. On the other hand, when the high-quality data is limited in scope, diversification by a modest amount of low-quality data improves the performance. Quantitatively, for parametrizing DFT (and perhaps also quantum-chemistry ML models), caution should be taken when more than 50% of the fitting set contains questionable data, and that the average error of the full set is more than 20 kJ mol<sup>-1</sup>. One may also follow the recently proposed transferability principles to ensure diversity in the fitting set.</p>\",\"PeriodicalId\":45,\"journal\":{\"name\":\"Journal of Chemical Theory and Computation\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":5.7000,\"publicationDate\":\"2024-11-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Chemical Theory and Computation\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1021/acs.jctc.4c01063\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Chemical Theory and Computation","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1021/acs.jctc.4c01063","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Data Quality in the Fitting of Approximate Models: A Computational Chemistry Perspective.
Empirical parametrization underpins many scientific methodologies including certain quantum-chemistry protocols [e.g., density functional theory (DFT), machine-learning (ML) models]. In some cases, the fitting requires a large amount of data, necessitating the use of data obtained using low-cost, and thus low-quality, means. Here we examine the effect of using low-quality data on the resulting method in the context of DFT methods. We use multiple G2/97 data sets of different qualities to fit the DFT-type methods. Encouragingly, this fitting can tolerate a relatively large proportion of low-quality fitting data, which may be attributed to the physical foundations of the DFT models and the use of a modest number of parameters. Further examination using "ML-quality" data shows that adding a large amount of low-quality data to a small number of high-quality ones may not offer tangible benefits. On the other hand, when the high-quality data is limited in scope, diversification by a modest amount of low-quality data improves the performance. Quantitatively, for parametrizing DFT (and perhaps also quantum-chemistry ML models), caution should be taken when more than 50% of the fitting set contains questionable data, and that the average error of the full set is more than 20 kJ mol-1. One may also follow the recently proposed transferability principles to ensure diversity in the fitting set.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.