可转座元件的积累推动了南美洲荨麻蛾物种 Hylesia metabus(鳞翅目:土星科)基因组大小的增加。

IF 3 2区 生物学 Q2 EVOLUTIONARY BIOLOGY
Charles Perrier, Rémi Allio, Fabrice Legeai, Mathieu Gautier, Frédéric Bénéluz, William Marande, Anthony Theron, Nathalie Rodde, Melfran Herrera, Laure Saune, Hugues Parrinello, Melanie Mcclure, Mónica Arias
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引用次数: 0

摘要

我们首次展示了Hylesia metabus(节肢动物门;昆虫纲;鳞翅目;鞘翅目)的核基因组组装和完整的有丝分裂基因组。组装的核基因组序列长达 1,271 Mb,是迄今为止发表的 10 个最大的鳞翅目基因组组装序列之一。它由 31 条假染色体构成,BUSCO 得分为 99.5%,与系统发育上接近的物种相比,具有高度保守的同源关系。重复元件占核基因组的 67%,主要位于基因间区,其中以 LINEs 为主,CR1-Zenon 的数量最多。对H. metabus基因组和另外17个Saturniidae和Sphingidae基因组的系统发育和比较分析表明,重复性元件的积累可能导致H. metabus基因组的增大。利用 Helixer 进行的基因注释确定了 26,122 个转录本。通过对两个重新测序的雌雄 H. metabus 进行同源分析和覆盖率变化,确定了 Z 支架。H. metabus核基因组和有丝分裂基因组的组装可以在BIPAA网站上找到和浏览,是未来种群和比较基因组学研究的有用资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Transposable element accumulation drives genome size increase in Hylesia metabus (Lepidoptera: Saturniidae), an urticating moth species from South America.

We present the first nuclear genome assembly and a complete mitogenome for Hylesia metabus (Arthropoda; Insecta; Lepidoptera; Saturniidae). The assembled nuclear genome sequence is 1,271 Mb long, which is among the 10 largest lepidopteran genome assemblies published to date. It is scaffolded in 31 pseudo chromosomes, has a BUSCO score of 99.5%, and has a highly conserved synteny compared to phylogenetically close species. Repetitive elements make up 67% of the nuclear genome and are mainly located in intergenic regions, among which LINEs were predominant, with CR1-Zenon being the most abundant. Phylogenetic and comparative analyses of H. metabus assembly and 17 additional Saturniidae and Sphingidae assemblies suggested that an accumulation of repetitive elements likely led to the increased size of H. metabus' genome. Gene annotation using Helixer identified 26,122 transcripts. The Z scaffold was identified using both a synteny analysis and variations of coverage for two resequenced male and female H. metabus. The H. metabus nuclear genome and mitogenome assemblies can be found and browsed on the BIPAA website and constitute useful resources for future population and comparative genomics studies.

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来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
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