{"title":"分子动力学模拟中混合的显式构型熵","authors":"T. Hanke, A. L. Upterworth and D. Sebastiani*, ","doi":"10.1021/acs.jpclett.4c0281910.1021/acs.jpclett.4c02819","DOIUrl":null,"url":null,"abstract":"<p >The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.</p>","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":"15 45","pages":"11320–11327 11320–11327"},"PeriodicalIF":4.8000,"publicationDate":"2024-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acs.jpclett.4c02819","citationCount":"0","resultStr":"{\"title\":\"Explicit Configurational Entropy of Mixing in Molecular Dynamics Simulations\",\"authors\":\"T. Hanke, A. L. Upterworth and D. Sebastiani*, \",\"doi\":\"10.1021/acs.jpclett.4c0281910.1021/acs.jpclett.4c02819\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p >The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.</p>\",\"PeriodicalId\":62,\"journal\":{\"name\":\"The Journal of Physical Chemistry Letters\",\"volume\":\"15 45\",\"pages\":\"11320–11327 11320–11327\"},\"PeriodicalIF\":4.8000,\"publicationDate\":\"2024-11-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://pubs.acs.org/doi/epdf/10.1021/acs.jpclett.4c02819\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The Journal of Physical Chemistry Letters\",\"FirstCategoryId\":\"1\",\"ListUrlMain\":\"https://pubs.acs.org/doi/10.1021/acs.jpclett.4c02819\",\"RegionNum\":2,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Journal of Physical Chemistry Letters","FirstCategoryId":"1","ListUrlMain":"https://pubs.acs.org/doi/10.1021/acs.jpclett.4c02819","RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Explicit Configurational Entropy of Mixing in Molecular Dynamics Simulations
The entropy of mixing of a multicomponent system of particles is a simple expression of the molar fractions for the equilibrium state, but its intermediate values for transient (nonequilibrium) states can not be calculated directly from the particle coordinates so far. We propose a simple expression for the configurational entropy of mixing based solely on the set of instantaneous coordinates, which is suitable for the on-the-fly determination of the degree of mixing along a molecular dynamics trajectory. We illustrate the applicability of our scheme with the example of several molecular mixtures that exhibit fast and slow mixing and demixing processes within a molecular dynamics simulation.
期刊介绍:
The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.