沼泽五叶草（Comarum palustre L.，又名Potentilla palustris (L.) Scop.）（蔷薇科）的基因组序列。

Q1 Medicine

Wellcome Open Research Pub Date : 2024-09-05 eCollection Date: 2024-01-01 DOI:10.12688/wellcomeopenres.23016.1

Maarten J M Christenhusz, Ilia J Leitch

{"title":"沼泽五叶草（Comarum palustre L.，又名Potentilla palustris (L.) Scop.）（蔷薇科）的基因组序列。","authors":"Maarten J M Christenhusz, Ilia J Leitch","doi":"10.12688/wellcomeopenres.23016.1","DOIUrl":null,"url":null,"abstract":"We present a genome assembly from an individual Comarum palustre (the marsh cinquefoil; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequence has a total length of 528.90 megabases. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules suggesting the individual is an allohexaploid (2 n = 6 x = 42). The mitochondrial and plastid genome assemblies have lengths of 362.32 kilobases and 154.29 kilobases, respectively. Gene annotation of this assembly on Ensembl identified 37,459 protein-coding genes.","PeriodicalId":23677,"journal":{"name":"Wellcome Open Research","volume":"9 ","pages":"518"},"PeriodicalIF":0.0000,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11549540/pdf/","citationCount":"0","resultStr":"{\"title\":\"The genome sequence of the marsh cinquefoil, Comarum palustre L., also known as Potentilla palustris (L.) Scop. (Rosaceae).\",\"authors\":\"Maarten J M Christenhusz, Ilia J Leitch\",\"doi\":\"10.12688/wellcomeopenres.23016.1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We present a genome assembly from an individual Comarum palustre (the marsh cinquefoil; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequence has a total length of 528.90 megabases. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules suggesting the individual is an allohexaploid (2 n = 6 x = 42). The mitochondrial and plastid genome assemblies have lengths of 362.32 kilobases and 154.29 kilobases, respectively. Gene annotation of this assembly on Ensembl identified 37,459 protein-coding genes.\",\"PeriodicalId\":23677,\"journal\":{\"name\":\"Wellcome Open Research\",\"volume\":\"9 \",\"pages\":\"518\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11549540/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Wellcome Open Research\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.12688/wellcomeopenres.23016.1\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q1\",\"JCRName\":\"Medicine\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Wellcome Open Research","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.12688/wellcomeopenres.23016.1","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"Medicine","Score":null,"Total":0}

引用次数: 0

摘要

我们展示了一个个体 Comarum palustre（沼泽五味子；链格藻纲；木兰目；蔷薇科）的基因组序列。基因组序列总长度为 528.90 兆字节。大部分序列组装成 21 个染色体假分子支架，表明该个体为异源六倍体（2 n = 6 x = 42）。线粒体和质粒基因组的组装长度分别为 362.32 千碱基和 154.29 千碱基。在 Ensembl 上对该基因组进行的基因注释发现了 37,459 个编码蛋白质的基因。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

查看原文本刊更多论文

The genome sequence of the marsh cinquefoil, Comarum palustre L., also known as Potentilla palustris (L.) Scop. (Rosaceae).

We present a genome assembly from an individual Comarum palustre (the marsh cinquefoil; Streptophyta; Magnoliopsida; Rosales; Rosaceae). The genome sequence has a total length of 528.90 megabases. Most of the assembly is scaffolded into 21 chromosomal pseudomolecules suggesting the individual is an allohexaploid (2 n = 6 x = 42). The mitochondrial and plastid genome assemblies have lengths of 362.32 kilobases and 154.29 kilobases, respectively. Gene annotation of this assembly on Ensembl identified 37,459 protein-coding genes.

求助全文

通过发布文献求助，成功后即可免费获取论文全文。去求助

来源期刊

Wellcome Open Research Biochemistry, Genetics and Molecular Biology-Biochemistry, Genetics and Molecular Biology (all)

CiteScore

5.50

自引率

0.00%

发文量

426

审稿时长

1 weeks

期刊介绍： Wellcome Open Research publishes scholarly articles reporting any basic scientific, translational and clinical research that has been funded (or co-funded) by Wellcome. Each publication must have at least one author who has been, or still is, a recipient of a Wellcome grant. Articles must be original (not duplications). All research, including clinical trials, systematic reviews, software tools, method articles, and many others, is welcome and will be published irrespective of the perceived level of interest or novelty; confirmatory and negative results, as well as null studies are all suitable. See the full list of article types here. All articles are published using a fully transparent, author-driven model: the authors are solely responsible for the content of their article. Invited peer review takes place openly after publication, and the authors play a crucial role in ensuring that the article is peer-reviewed by independent experts in a timely manner. Articles that pass peer review will be indexed in PubMed and elsewhere. Wellcome Open Research is an Open Research platform: all articles are published open access; the publishing and peer-review processes are fully transparent; and authors are asked to include detailed descriptions of methods and to provide full and easy access to source data underlying the results to improve reproducibility.