Ekin Esme Bas*, Karen Marlenne Garcia Alvarez, Andreas Schneemann, Thomas Heine and Dorothea Golze*,
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In this work, we propose a robust computational framework based on <i>ab initio</i> molecular dynamics (AIMD), where we compute IR and Raman spectra from the time-correlation functions of dipole moments and polarizability tensors, respectively. As a case study, we apply our methodology to a covalent organic framework (COF) material, COF-1, and present its AIMD-computed IR and Raman spectra with and without 1,4-dioxane solvent molecules in its pores. To determine robust settings, we meticulously validate our model and explore how stacking disorder and different methods for computing dipole moments and polarizabilities affect IR and Raman intensities. Using our robust computational protocol, we achieve excellent agreement with experimental data. 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引用次数: 0
摘要
层状框架材料是一类发展迅速的多孔材料,由通过共价键缝合在一起的分子成分组成,通常通过湿化学方法合成。计算红外光谱和拉曼光谱是这一类材料最重要的表征工具。除了分子构件和溶剂的先验已知光谱外,它们还能在合成过程中对框架的形成进行现场监测。因此,它们需要捕捉到主客体相互作用产生的额外峰值以及分子构件之间出现的键带,以验证所需材料的成功合成。在这项工作中,我们提出了一种基于原子分子动力学(ab initio molecular dynamics,AIMD)的稳健计算框架,根据偶极矩和极化性张量的时间相关函数分别计算红外光谱和拉曼光谱。作为一个案例研究,我们将我们的方法应用于共价有机框架(COF)材料 COF-1,并展示了其孔隙中含有和不含有 1,4-二氧六环溶剂分子时的 AIMD 计算的红外光谱和拉曼光谱。为了确定稳健的设置,我们对模型进行了细致的验证,并探讨了堆叠无序以及计算偶极矩和极化率的不同方法对红外和拉曼强度的影响。利用我们稳健的计算方案,我们获得了与实验数据极佳的一致性。此外,我们还说明了如何将计算光谱分解为来自溶剂分子、COF-1 的分子构件以及连接它们的键的单独贡献。
Robust Computation and Analysis of Vibrational Spectra of Layered Framework Materials Including Host–Guest Interactions
Layered framework materials, a rapidly advancing class of porous materials, are composed of molecular components stitched together via covalent bonds and are usually synthesized through wet-chemical methods. Computational infrared (IR) and Raman spectra are among the most important characterization tools for this material class. Besides the a priori known spectra of the molecular building blocks and the solvent, they allow for in situ monitoring of the framework formation during synthesis. Therefore, they need to capture the additional peaks from host–guest interactions and the bands from emerging bonds between the molecular building blocks, verifying the successful synthesis of the desired material. In this work, we propose a robust computational framework based on ab initio molecular dynamics (AIMD), where we compute IR and Raman spectra from the time-correlation functions of dipole moments and polarizability tensors, respectively. As a case study, we apply our methodology to a covalent organic framework (COF) material, COF-1, and present its AIMD-computed IR and Raman spectra with and without 1,4-dioxane solvent molecules in its pores. To determine robust settings, we meticulously validate our model and explore how stacking disorder and different methods for computing dipole moments and polarizabilities affect IR and Raman intensities. Using our robust computational protocol, we achieve excellent agreement with experimental data. Furthermore, we illustrate how the computed spectra can be dissected into individual contributions from the solvent molecules, the molecular building blocks of COF-1, and the bonds connecting them.
期刊介绍:
The Journal of Chemical Theory and Computation invites new and original contributions with the understanding that, if accepted, they will not be published elsewhere. Papers reporting new theories, methodology, and/or important applications in quantum electronic structure, molecular dynamics, and statistical mechanics are appropriate for submission to this Journal. Specific topics include advances in or applications of ab initio quantum mechanics, density functional theory, design and properties of new materials, surface science, Monte Carlo simulations, solvation models, QM/MM calculations, biomolecular structure prediction, and molecular dynamics in the broadest sense including gas-phase dynamics, ab initio dynamics, biomolecular dynamics, and protein folding. The Journal does not consider papers that are straightforward applications of known methods including DFT and molecular dynamics. The Journal favors submissions that include advances in theory or methodology with applications to compelling problems.