用于保护监测的基因组易感性专题层。

IF 4.5 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY
Andrew N Black, Jong Yoon Jeon, Andrew J Mularo, Natalie M Allen, Erangi Heenkenda, Julia C Buchanan-Schwanke, John W Bickham, Zachary E Lowe, J Andrew DeWoody
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引用次数: 0

摘要

种群基因组学在为应用保护管理和相关政策提供信息方面有着巨大的潜力。然而,对种群基因组数据集进行生物信息学分析和解释可能令人生畏,而且很难传达给非专业人员,包括与许多州、联邦和国际机构合作的实地保护人员。我们认为,可以对感兴趣的单个种群基因组指标进行插值,并最终提炼出代表保护监测中的时空基因组潜力(或反之,敏感性)的专题 GIS 图层。作为与正在进行的保护工作相关的例子,我们使用引种杂交和个体杂合度来说明绘制种群基因组易感性图谱的概念方法。主题层的一般框架可扩展到整合与许多保护工作相关的关键基因组指标(如同源性和基因组负荷的运行)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Thematic Layers of Genomic Susceptibility for Conservation Monitoring.

Population genomics has great potential to inform applied conservation management and associated policy. However, the bioinformatic analyses and interpretation of population genomic datasets can be daunting and difficult to convey to nonspecialists, including on-the-ground conservationists that work with many state, federal and international agencies. We think that individual population genomic metrics of interest can be interpolated and ultimately distilled into thematic GIS layers that represent spatiotemporal genomic potential (or conversely, susceptibility) in conservation monitoring. As examples relevant to ongoing conservation efforts, we use introgressive hybridisation and individual heterozygosity to illustrate a conceptual approach for mapping population genomic susceptibility. The general framework of thematic layers could be extended to integrate key genomic metrics (e.g., runs of homozygosity and genomic load) that are relevant to many conservation efforts.

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来源期刊
Molecular Ecology
Molecular Ecology 生物-进化生物学
CiteScore
8.40
自引率
10.20%
发文量
472
审稿时长
1 months
期刊介绍: Molecular Ecology publishes papers that utilize molecular genetic techniques to address consequential questions in ecology, evolution, behaviour and conservation. Studies may employ neutral markers for inference about ecological and evolutionary processes or examine ecologically important genes and their products directly. We discourage papers that are primarily descriptive and are relevant only to the taxon being studied. Papers reporting on molecular marker development, molecular diagnostics, barcoding, or DNA taxonomy, or technical methods should be re-directed to our sister journal, Molecular Ecology Resources. Likewise, papers with a strongly applied focus should be submitted to Evolutionary Applications. Research areas of interest to Molecular Ecology include: * population structure and phylogeography * reproductive strategies * relatedness and kin selection * sex allocation * population genetic theory * analytical methods development * conservation genetics * speciation genetics * microbial biodiversity * evolutionary dynamics of QTLs * ecological interactions * molecular adaptation and environmental genomics * impact of genetically modified organisms
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