加州特有肝草 Calasterella californica 的基因组组装。

IF 3 2区 生物学 Q2 EVOLUTIONARY BIOLOGY
Ixchel S González-Ramírez, Merly Escalona, Courtney Miller, Noravit Chumchim, Mohan P A Marimuthu, Oanh Nguyen, Michael J Song, Brent D Mishler
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引用次数: 0

摘要

Calasterella californica 属于北美西海岸特有的单型肝草属,主要分布在加利福尼亚州。这种二栖物种生活在从沙漠到红杉林的各种生态系统中;人们对该物种如何适应这些看似截然不同的环境知之甚少。在本文中,我们报告了 Calasterella californica 核基因组的组装情况。作为加利福尼亚保护基因组学项目(CCGP)的一部分,我们利用太平洋生物科学公司的 HiFi 长序列测序数据进行了从头组装,该组装由 772 个等位基因组成,总长度为 517 Mbp,BUSCO 完整性得分率为 95%。加利福尼亚草是肝草类中第六个拥有核参考基因组的物种,而肝草类中已描述的物种超过 7200 种。该参考基因组的获得将有助于研究加州锎和其他肝草的独特特征,为比较了解肝草基因组铺平道路,并为在 CCGP 项目中研究该物种的地理变异增添一个重要的起点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A genome assembly for the California endemic liverwort Calasterella californica.

Calasterella californica belongs to a monotypic genus of liverworts endemic to the west coast of North America, primarily distributed in California. This dioicous species occurs in a variety of ecosystems from deserts to redwood forest; little is known about how this species is adapted to live in those seemingly contrasting environments. In this paper, we report the assembly of the nuclear genome of Calasterella californica. As part of the California Conservation Genomics Project (CCGP), we used Pacific Biosciences HiFi long-read sequencing data to produce a de novo assembly that consists of 772 contigs, with a total length of 517 Mbp and a BUSCO complete score of 95%. C. californica is only the sixth species of liverworts - a group with more than 7200 described species - to have a nuclear reference genome. The availability of this reference genome will facilitate the study of the unique features of C. californica and other liverworts, pave the road towards a comparative understanding of liverwort genomes, and add an important starting point for studies of the geographic variation of this species within the CCGP project.

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来源期刊
Journal of Heredity
Journal of Heredity 生物-遗传学
CiteScore
5.20
自引率
6.50%
发文量
63
审稿时长
6-12 weeks
期刊介绍: Over the last 100 years, the Journal of Heredity has established and maintained a tradition of scholarly excellence in the publication of genetics research. Virtually every major figure in the field has contributed to the journal. Established in 1903, Journal of Heredity covers organismal genetics across a wide range of disciplines and taxa. Articles include such rapidly advancing fields as conservation genetics of endangered species, population structure and phylogeography, molecular evolution and speciation, molecular genetics of disease resistance in plants and animals, genetic biodiversity and relevant computer programs.
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