Mengfei Liu, Xiaoyi Wang, Hongbin Wang, Guohong Li, Mingyang Pei, Gege Liu, Mei Wang
{"title":"大网纤锯蝇(Acantholyda posticalis)微卫星标记的全基因组开发与特征描述","authors":"Mengfei Liu, Xiaoyi Wang, Hongbin Wang, Guohong Li, Mingyang Pei, Gege Liu, Mei Wang","doi":"10.1002/ece3.70500","DOIUrl":null,"url":null,"abstract":"<p>The great web-spinning sawfly <i>Acantholyda posticalis</i> is notorious for damaging <i>Pinus</i> forests across the Palearctic region. At present, uncertainties persist regarding its intraspecies variation and presumed subspecies. To use as tools for future studies, herein we developed genome-wide microsatellite markers for <i>A. posticalis</i>. Through searching, rigorous manual screening, and amplification trial, 56 microsatellite markers were obtained from the genome sequences. We characterized these markers across two populations from Shandong province (SD) and Heilongjiang province (HLJ) in China, and carried out cross-amplification in three related species. Out of the 56 markers tested, 10, 31, and 15 were categorized into high, moderate, and low polymorphic levels, respectively, based on their polymorphic information content (PIC) values. Meanwhile, 28, 19, and 4 microsatellite loci were successfully cross-amplified in <i>Cephalcia yanqingensis</i>, <i>C. chuxiongica</i>, and <i>C. infumata</i>, respectively, which could serve as potential molecular markers for their further studies. STRUCTURE and PCoA analyses revealed two distinct clusters corresponding to SD and HLJ, respectively, indicating a high resolution of these markers. Therefore,the 56 microsatellite markers identified here have the potential to serve as efficient tools for unraveling intraspecies variation and evolutionary history of <i>A. posticalis</i>.</p>","PeriodicalId":11467,"journal":{"name":"Ecology and Evolution","volume":"14 11","pages":""},"PeriodicalIF":2.3000,"publicationDate":"2024-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534431/pdf/","citationCount":"0","resultStr":"{\"title\":\"Genome-Wide Development and Characterization of Microsatellite Markers in the Great Web-Spinning Sawfly Acantholyda posticalis\",\"authors\":\"Mengfei Liu, Xiaoyi Wang, Hongbin Wang, Guohong Li, Mingyang Pei, Gege Liu, Mei Wang\",\"doi\":\"10.1002/ece3.70500\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The great web-spinning sawfly <i>Acantholyda posticalis</i> is notorious for damaging <i>Pinus</i> forests across the Palearctic region. At present, uncertainties persist regarding its intraspecies variation and presumed subspecies. To use as tools for future studies, herein we developed genome-wide microsatellite markers for <i>A. posticalis</i>. Through searching, rigorous manual screening, and amplification trial, 56 microsatellite markers were obtained from the genome sequences. We characterized these markers across two populations from Shandong province (SD) and Heilongjiang province (HLJ) in China, and carried out cross-amplification in three related species. Out of the 56 markers tested, 10, 31, and 15 were categorized into high, moderate, and low polymorphic levels, respectively, based on their polymorphic information content (PIC) values. Meanwhile, 28, 19, and 4 microsatellite loci were successfully cross-amplified in <i>Cephalcia yanqingensis</i>, <i>C. chuxiongica</i>, and <i>C. infumata</i>, respectively, which could serve as potential molecular markers for their further studies. STRUCTURE and PCoA analyses revealed two distinct clusters corresponding to SD and HLJ, respectively, indicating a high resolution of these markers. Therefore,the 56 microsatellite markers identified here have the potential to serve as efficient tools for unraveling intraspecies variation and evolutionary history of <i>A. posticalis</i>.</p>\",\"PeriodicalId\":11467,\"journal\":{\"name\":\"Ecology and Evolution\",\"volume\":\"14 11\",\"pages\":\"\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-11-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534431/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Ecology and Evolution\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/ece3.70500\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ECOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Ecology and Evolution","FirstCategoryId":"99","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/ece3.70500","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ECOLOGY","Score":null,"Total":0}
Genome-Wide Development and Characterization of Microsatellite Markers in the Great Web-Spinning Sawfly Acantholyda posticalis
The great web-spinning sawfly Acantholyda posticalis is notorious for damaging Pinus forests across the Palearctic region. At present, uncertainties persist regarding its intraspecies variation and presumed subspecies. To use as tools for future studies, herein we developed genome-wide microsatellite markers for A. posticalis. Through searching, rigorous manual screening, and amplification trial, 56 microsatellite markers were obtained from the genome sequences. We characterized these markers across two populations from Shandong province (SD) and Heilongjiang province (HLJ) in China, and carried out cross-amplification in three related species. Out of the 56 markers tested, 10, 31, and 15 were categorized into high, moderate, and low polymorphic levels, respectively, based on their polymorphic information content (PIC) values. Meanwhile, 28, 19, and 4 microsatellite loci were successfully cross-amplified in Cephalcia yanqingensis, C. chuxiongica, and C. infumata, respectively, which could serve as potential molecular markers for their further studies. STRUCTURE and PCoA analyses revealed two distinct clusters corresponding to SD and HLJ, respectively, indicating a high resolution of these markers. Therefore,the 56 microsatellite markers identified here have the potential to serve as efficient tools for unraveling intraspecies variation and evolutionary history of A. posticalis.
期刊介绍:
Ecology and Evolution is the peer reviewed journal for rapid dissemination of research in all areas of ecology, evolution and conservation science. The journal gives priority to quality research reports, theoretical or empirical, that develop our understanding of organisms and their diversity, interactions between them, and the natural environment.
Ecology and Evolution gives prompt and equal consideration to papers reporting theoretical, experimental, applied and descriptive work in terrestrial and aquatic environments. The journal will consider submissions across taxa in areas including but not limited to micro and macro ecological and evolutionary processes, characteristics of and interactions between individuals, populations, communities and the environment, physiological responses to environmental change, population genetics and phylogenetics, relatedness and kin selection, life histories, systematics and taxonomy, conservation genetics, extinction, speciation, adaption, behaviour, biodiversity, species abundance, macroecology, population and ecosystem dynamics, and conservation policy.