Xue Ma, Yao Hu, Jing Hou, Yu-Guang Zhou, Heng-Lin Cui
{"title":"基于基因组的 \"Haloarcula aidinensis \"分类以及从内陆盐湖、沿海盐渍土和海洋日光盐层中分离出的三种新型嗜卤古细菌的描述。","authors":"Xue Ma, Yao Hu, Jing Hou, Yu-Guang Zhou, Heng-Lin Cui","doi":"10.1007/s00284-024-03970-9","DOIUrl":null,"url":null,"abstract":"<p><p>'Haloarcula aidinensis' was described by a pioneer Chinese scientist focused on halophilic archaea thirty years ago, and the type strain of 'Haloarcula aidinensis' was recently classified based on phylogenetic, phylogenomic, and comparative genomic analyses. Other three novel halophilic archaeal strains, CK38<sup>T</sup>, DT43<sup>T</sup>, and SYNS111<sup>T</sup>, isolated from diverse saline environments in China, were simultaneously subjected to polyphasic classification. 'Haloarcula aidinensis' A<sub>5</sub> was found to be related to Haloarcula amylolytica, while strains CK38<sup>T</sup>, DT43<sup>T</sup>, and SYNS111<sup>T</sup> represented three novel species of Haloarcula based on phylogenetic, phylogenomic, and comparative genomic analyses. These strains can be distinguished from other species within the genus Haloarcula based on multiple phenotypic characteristics. The major phospholipids, phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester, and phosphatidylglycerol sulfate can be detected in these strains, while the glycolipid profiles of these strains are diverse. Strains A<sub>5</sub> and DT43<sup>T</sup> contained glucosyl mannosyl glucosyl diether and a diglycosyl diether, while other strains CK38<sup>T</sup> and SYNS111<sup>T</sup> had sulfated mannosyl glucosyl diether and mannosyl glucosyl diether. Thus, strain A<sub>5</sub> should be a reference strain of Har. amylolytica and three novel species of Haloarcula, Haloarcula sediminis sp. nov., Haloarcula brevis sp. nov., and Haloarcula regularis sp. nov. are proposed to accommodate strains CK38<sup>T</sup> (= CGMCC 1.62732<sup>T</sup> = JCM 36675<sup>T</sup>), DT43<sup>T</sup> (= CGMCC 1.18924<sup>T</sup> = JCM 36146<sup>T</sup>), and SYNS111<sup>T</sup> (= CGMCC 1.62601<sup>T</sup> = JCM 36149<sup>T</sup>).</p>","PeriodicalId":11360,"journal":{"name":"Current Microbiology","volume":"81 12","pages":"442"},"PeriodicalIF":2.3000,"publicationDate":"2024-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-Based Classification of 'Haloarcula aidinensis' and Description of Three Novel Halophilic Archaea Isolated from an Inland Saline Lake, Coastal Saline Soil, and a Marine Solar Saltern.\",\"authors\":\"Xue Ma, Yao Hu, Jing Hou, Yu-Guang Zhou, Heng-Lin Cui\",\"doi\":\"10.1007/s00284-024-03970-9\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>'Haloarcula aidinensis' was described by a pioneer Chinese scientist focused on halophilic archaea thirty years ago, and the type strain of 'Haloarcula aidinensis' was recently classified based on phylogenetic, phylogenomic, and comparative genomic analyses. Other three novel halophilic archaeal strains, CK38<sup>T</sup>, DT43<sup>T</sup>, and SYNS111<sup>T</sup>, isolated from diverse saline environments in China, were simultaneously subjected to polyphasic classification. 'Haloarcula aidinensis' A<sub>5</sub> was found to be related to Haloarcula amylolytica, while strains CK38<sup>T</sup>, DT43<sup>T</sup>, and SYNS111<sup>T</sup> represented three novel species of Haloarcula based on phylogenetic, phylogenomic, and comparative genomic analyses. These strains can be distinguished from other species within the genus Haloarcula based on multiple phenotypic characteristics. The major phospholipids, phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester, and phosphatidylglycerol sulfate can be detected in these strains, while the glycolipid profiles of these strains are diverse. Strains A<sub>5</sub> and DT43<sup>T</sup> contained glucosyl mannosyl glucosyl diether and a diglycosyl diether, while other strains CK38<sup>T</sup> and SYNS111<sup>T</sup> had sulfated mannosyl glucosyl diether and mannosyl glucosyl diether. Thus, strain A<sub>5</sub> should be a reference strain of Har. amylolytica and three novel species of Haloarcula, Haloarcula sediminis sp. nov., Haloarcula brevis sp. nov., and Haloarcula regularis sp. nov. are proposed to accommodate strains CK38<sup>T</sup> (= CGMCC 1.62732<sup>T</sup> = JCM 36675<sup>T</sup>), DT43<sup>T</sup> (= CGMCC 1.18924<sup>T</sup> = JCM 36146<sup>T</sup>), and SYNS111<sup>T</sup> (= CGMCC 1.62601<sup>T</sup> = JCM 36149<sup>T</sup>).</p>\",\"PeriodicalId\":11360,\"journal\":{\"name\":\"Current Microbiology\",\"volume\":\"81 12\",\"pages\":\"442\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-11-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Current Microbiology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s00284-024-03970-9\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MICROBIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Microbiology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s00284-024-03970-9","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MICROBIOLOGY","Score":null,"Total":0}
Genome-Based Classification of 'Haloarcula aidinensis' and Description of Three Novel Halophilic Archaea Isolated from an Inland Saline Lake, Coastal Saline Soil, and a Marine Solar Saltern.
'Haloarcula aidinensis' was described by a pioneer Chinese scientist focused on halophilic archaea thirty years ago, and the type strain of 'Haloarcula aidinensis' was recently classified based on phylogenetic, phylogenomic, and comparative genomic analyses. Other three novel halophilic archaeal strains, CK38T, DT43T, and SYNS111T, isolated from diverse saline environments in China, were simultaneously subjected to polyphasic classification. 'Haloarcula aidinensis' A5 was found to be related to Haloarcula amylolytica, while strains CK38T, DT43T, and SYNS111T represented three novel species of Haloarcula based on phylogenetic, phylogenomic, and comparative genomic analyses. These strains can be distinguished from other species within the genus Haloarcula based on multiple phenotypic characteristics. The major phospholipids, phosphatidylglycerol, phosphatidylglycerol phosphate methyl ester, and phosphatidylglycerol sulfate can be detected in these strains, while the glycolipid profiles of these strains are diverse. Strains A5 and DT43T contained glucosyl mannosyl glucosyl diether and a diglycosyl diether, while other strains CK38T and SYNS111T had sulfated mannosyl glucosyl diether and mannosyl glucosyl diether. Thus, strain A5 should be a reference strain of Har. amylolytica and three novel species of Haloarcula, Haloarcula sediminis sp. nov., Haloarcula brevis sp. nov., and Haloarcula regularis sp. nov. are proposed to accommodate strains CK38T (= CGMCC 1.62732T = JCM 36675T), DT43T (= CGMCC 1.18924T = JCM 36146T), and SYNS111T (= CGMCC 1.62601T = JCM 36149T).
期刊介绍:
Current Microbiology is a well-established journal that publishes articles in all aspects of microbial cells and the interactions between the microorganisms, their hosts and the environment.
Current Microbiology publishes original research articles, short communications, reviews and letters to the editor, spanning the following areas:
physiology, biochemistry, genetics, genomics, biotechnology, ecology, evolution, morphology, taxonomy, diagnostic methods, medical and clinical microbiology and immunology as applied to microorganisms.