芯片癌症实验非局部积分微分模型的两步全局敏感性分析。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Elio Campanile , Annachiara Colombi , Gabriella Bretti
{"title":"芯片癌症实验非局部积分微分模型的两步全局敏感性分析。","authors":"Elio Campanile ,&nbsp;Annachiara Colombi ,&nbsp;Gabriella Bretti","doi":"10.1016/j.mbs.2024.109330","DOIUrl":null,"url":null,"abstract":"<div><div>The present work focuses on a non-local integro-differential model reproducing Cancer-on-chip experiments where tumor cells, treated with chemotherapy drugs, secrete chemical signals stimulating the immune response. The reliability of the model in reproducing the phenomenon of interest is investigated through a global sensitivity analysis, rather than a local one, to have global information about the role of parameters, and by examining potential non-linear effects in greater detail. Focusing on a region in the parameter space, the effect of 13 model parameters on the <em>in silico</em> outcome is investigated by considering 11 different target outputs, properly selected to monitor the spatial distribution and the dynamics of immune cells along the period of observation. In order to cope with the large number of model parameters to be investigated and the computational cost of each numerical simulation, a two-step global sensitivity analysis is performed. First, the screening Morris method is applied to rank the effect of the 13 model parameters on each target output and it emerges that all the output targets are mainly affected by the same 6 parameters. The extended Fourier Amplitude Sensitivity Test (eFAST) method is then used to quantify the role of these 6 parameters. As a result, the proposed analysis highlights the feasibility of the considered space of parameters, and indicates that the most relevant parameters are those related to the chemical field and cell-substrate adhesion. In turn, it suggests how to possibly improve the model description as well as the calibration procedure, in order to better capture the observed phenomena and, at the same time, reduce the complexity of the simulation algorithm. On one hand, the model could be simplified by neglecting cell–cell alignment effects unless clear empirical evidences of their importance emerge. On the other hand, the best way to increase the accuracy and reliability of our model predictions would be to have experimental data/information to reduce the uncertainty of the more relevant parameters.</div></div>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Two-step global sensitivity analysis of a non-local integro-differential model for Cancer-on-Chip experiments\",\"authors\":\"Elio Campanile ,&nbsp;Annachiara Colombi ,&nbsp;Gabriella Bretti\",\"doi\":\"10.1016/j.mbs.2024.109330\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The present work focuses on a non-local integro-differential model reproducing Cancer-on-chip experiments where tumor cells, treated with chemotherapy drugs, secrete chemical signals stimulating the immune response. The reliability of the model in reproducing the phenomenon of interest is investigated through a global sensitivity analysis, rather than a local one, to have global information about the role of parameters, and by examining potential non-linear effects in greater detail. Focusing on a region in the parameter space, the effect of 13 model parameters on the <em>in silico</em> outcome is investigated by considering 11 different target outputs, properly selected to monitor the spatial distribution and the dynamics of immune cells along the period of observation. In order to cope with the large number of model parameters to be investigated and the computational cost of each numerical simulation, a two-step global sensitivity analysis is performed. First, the screening Morris method is applied to rank the effect of the 13 model parameters on each target output and it emerges that all the output targets are mainly affected by the same 6 parameters. The extended Fourier Amplitude Sensitivity Test (eFAST) method is then used to quantify the role of these 6 parameters. As a result, the proposed analysis highlights the feasibility of the considered space of parameters, and indicates that the most relevant parameters are those related to the chemical field and cell-substrate adhesion. In turn, it suggests how to possibly improve the model description as well as the calibration procedure, in order to better capture the observed phenomena and, at the same time, reduce the complexity of the simulation algorithm. On one hand, the model could be simplified by neglecting cell–cell alignment effects unless clear empirical evidences of their importance emerge. On the other hand, the best way to increase the accuracy and reliability of our model predictions would be to have experimental data/information to reduce the uncertainty of the more relevant parameters.</div></div>\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2024-10-30\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0025556424001901\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0025556424001901","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
引用次数: 0

摘要

本研究的重点是一个非局部积分微分模型,该模型再现了肿瘤细胞在接受化疗药物治疗后分泌化学信号刺激免疫反应的片上癌症实验。为了获得有关参数作用的全局信息,我们通过全局敏感性分析(而不是局部敏感性分析),并通过更详细地研究潜在的非线性效应,来研究该模型在重现相关现象方面的可靠性。以参数空间中的一个区域为重点,通过考虑 11 种不同的目标输出,研究了 13 个模型参数对硅学结果的影响。为了应对需要研究的大量模型参数和每次数值模拟的计算成本,我们分两步进行了全局敏感性分析。首先,应用筛选莫里斯法对 13 个模型参数对每个目标输出的影响进行排序,结果发现所有输出目标主要受相同的 6 个参数影响。然后,使用扩展的傅立叶振幅灵敏度测试(eFAST)方法来量化这 6 个参数的作用。结果,所提出的分析强调了所考虑的参数空间的可行性,并表明最相关的参数是那些与化学场和细胞-基底粘附有关的参数。反过来,分析还提出了如何改进模型描述和校准程序,以便更好地捕捉观察到的现象,同时降低模拟算法的复杂性。一方面,除非有明确的经验证据证明细胞间排列效应的重要性,否则可以通过忽略细胞间排列效应来简化模型。另一方面,提高模型预测准确性和可靠性的最佳方法是获得实验数据/信息,以减少更多相关参数的不确定性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Two-step global sensitivity analysis of a non-local integro-differential model for Cancer-on-Chip experiments
The present work focuses on a non-local integro-differential model reproducing Cancer-on-chip experiments where tumor cells, treated with chemotherapy drugs, secrete chemical signals stimulating the immune response. The reliability of the model in reproducing the phenomenon of interest is investigated through a global sensitivity analysis, rather than a local one, to have global information about the role of parameters, and by examining potential non-linear effects in greater detail. Focusing on a region in the parameter space, the effect of 13 model parameters on the in silico outcome is investigated by considering 11 different target outputs, properly selected to monitor the spatial distribution and the dynamics of immune cells along the period of observation. In order to cope with the large number of model parameters to be investigated and the computational cost of each numerical simulation, a two-step global sensitivity analysis is performed. First, the screening Morris method is applied to rank the effect of the 13 model parameters on each target output and it emerges that all the output targets are mainly affected by the same 6 parameters. The extended Fourier Amplitude Sensitivity Test (eFAST) method is then used to quantify the role of these 6 parameters. As a result, the proposed analysis highlights the feasibility of the considered space of parameters, and indicates that the most relevant parameters are those related to the chemical field and cell-substrate adhesion. In turn, it suggests how to possibly improve the model description as well as the calibration procedure, in order to better capture the observed phenomena and, at the same time, reduce the complexity of the simulation algorithm. On one hand, the model could be simplified by neglecting cell–cell alignment effects unless clear empirical evidences of their importance emerge. On the other hand, the best way to increase the accuracy and reliability of our model predictions would be to have experimental data/information to reduce the uncertainty of the more relevant parameters.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信