基于图像的燕麦谷粒形态遗传结构模型的有限混合分布

IF 2 3区 农林科学 Q2 AGRONOMY
Crop Science Pub Date : 2024-10-31 DOI:10.1002/csc2.21400
Inés Berro, Brian S. Yandell, Lucía Gutiérrez
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引用次数: 0

摘要

多花燕麦(Avena sativa L.)花序会影响谷粒的大小和形状分布,从而影响谷粒质量的物理属性,如丰满度、大小和均匀性。虽然谷粒大小和形状分布具有多模式的特征,但人们对这些分布及其特性的遗传决定因素知之甚少。本研究的目的是利用有限混合分布方法建立粒度和粒形分布模型,并提出新的分布性状(即新兴分布性状)来描述基因型。我们在四个高度重复的田间试验中评估了 47 个燕麦基因型。对每个小区三个圆锥花序的谷粒进行单独脱粒和扫描。从每个谷粒的图像中获得谷粒的面积、长度、宽度和圆度,同时使用有限混合分布法评估新出现的分布性状。最后,将手工脱粒的圆锥花序的谷粒大小分布(代表完整的生物分布)与用联合收割机收割的谷粒大小分布进行比较,后者代表商业收割,小谷粒可能会被吹掉。所有谷粒性状的遗传率都很高(0.89-0.94),不同基因型的性状分布也不同。谷粒面积和长度呈双正态分布和三正态分布,而谷粒宽度和圆度呈单正态分布和双正态分布。虽然谷粒的全生物分布与联合收获的谷粒不同,但它们的遗传相关性很高,这表明联合收获的分布可作为全生物分布的代表。本研究提出了一种直接的谷物属性建模方法,有助于遗传研究、育种决策和产业特征的质量评估。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A finite mixture distribution to model genetic architecture of image‐based oat grain morphology
The multi‐floral oat (Avena sativa L.) inflorescence influences grain size and shape distributions, affecting the physical attributes of grain quality such as plumpness, size, and uniformity. While the grain size and shape distribution has been characterized as multi‐modal, very little is known about the genetic determinants of those distributions and their properties. The goal of this study was to model grain size and shape distribution using a finite mixture distribution approach and propose new distributional traits (i.e., emerging distributional traits) to characterize genotypes. We evaluated 47 oat genotypes in four highly replicated field experiments. Grains of three panicles per plot were individually threshed and scanned. Grain area, length, width, and roundness were obtained from each grain‐based image, while emerging distributional traits were evaluated using a finite mixture distribution approach. Finally, grain size distributions from hand‐threshed panicles (representing the full biological distribution) were compared with the grain size distributions of grains harvested with a combine harvester representing commercial harvest where small grains may be blown out. The heritability of all grain traits was high (0.89–0.94), and trait distributions differed among genotypes. Grain area and length show bi‐ and trimodal distributions, while grain width and roundness are uni‐ and bimodal. Although the full biological distribution of grains differed from the combine‐harvested grains, their genetic correlations were high, suggesting the combine‐harvested distributions can be used as a proxy for full biological distributions. This study proposes a straightforward methodological approach to model grain attributes that can aid in quality evaluations for genetic studies, breeding decisions, and industry characterization.
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来源期刊
Crop Science
Crop Science 农林科学-农艺学
CiteScore
4.50
自引率
8.70%
发文量
197
审稿时长
3 months
期刊介绍: Articles in Crop Science are of interest to researchers, policy makers, educators, and practitioners. The scope of articles in Crop Science includes crop breeding and genetics; crop physiology and metabolism; crop ecology, production, and management; seed physiology, production, and technology; turfgrass science; forage and grazing land ecology and management; genomics, molecular genetics, and biotechnology; germplasm collections and their use; and biomedical, health beneficial, and nutritionally enhanced plants. Crop Science publishes thematic collections of articles across its scope and includes topical Review and Interpretation, and Perspectives articles.
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