Hira Khalid , Muhammad Hassan Butt , Aziz ur Rehman Aziz , Iqra Ahmad , Farzana Iqbal , Amen Shamim , Umar Nishan , Riaz Ullah , Mohamed A. Ibrahim , Arlindo Alencar Moura , Mohibullah Shah , Wenwen Sun
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We identified 11 secondary metabolites, including palmitic acid α-monoglyceride, (+)-(2 R)-6-propionyloxyethyl-4′,5,7-trihydroxyisoflavanone, Abruquinone E, and Aurantiamide Acetate, among others, showed stronger interactions with the receptor than the native ligand N-acetyl cysteine. Surprisingly, except one, all of these metabolites were from <em>Abrus precatorius</em> L. [Fabaceae] affirming its ethnopharmacological use against diabetes. The stability of the interactions between the ligands and receptor protein was evaluated through Molecular Dynamic (MD) simulation trajectories including root mean square deviation (RMSD), root mean square fluctuation (RMSF), radius of gyration (Rg), H bonds, β-factor analysis, and binding energy calculation through MM/GBSA method. The efficacy of top metabolites in inhibiting α-glucosidase is depicted in pharmacophore analysis. A comprehensive pharmacokinetics analysis confirmed the druggability, safety, and efficiency of top drug candidates. 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引用次数: 0
摘要
小肠中的α-葡萄糖苷酶能调节血糖水平,刺激低聚糖和多糖的水解,增加体内的葡萄糖含量。抑制这种酶会减缓葡萄糖的消化和吸收,从而使餐后血糖水平保持在较低水平,导致对胰岛素的需求减少。在此,我们对阿育吠陀抗糖尿病植物进行了研究,并对这些植物的 478 种植物化学物质库进行了针对人类 α-葡萄糖苷酶的虚拟筛选。我们发现了 11 种次生代谢物,包括棕榈酸 α-单甘酯、(+)-(2 R)-6- 丙酰氧基乙基-4′,5,7-三羟基异黄烷酮、阿布鲁醌 E 和醋酸金盏花酰胺等,它们与受体的相互作用比原生配体 N-乙酰半胱氨酸更强。令人惊讶的是,除一种代谢物外,所有这些代谢物都来自 Abrus precatorius L. [豆科],这肯定了它在防治糖尿病方面的民族药学用途。通过分子动力学(MD)模拟轨迹,包括均方根偏差(RMSD)、均方根波动(RMSF)、回旋半径(Rg)、H 键、β 因子分析以及 MM/GBSA 方法计算结合能,评估了配体与受体蛋白之间相互作用的稳定性。药代动力学分析表明了顶级代谢物对α-葡萄糖苷酶的抑制作用。全面的药代动力学分析证实了顶级候选药物的可药性、安全性和有效性。此外,我们还预测了这些顶级代谢物在生物系统中的相互作用。本研究中描述的药用特性将有助于开发用于治疗目的的活性候选药物。建议进行进一步的实验,以证明这些代谢物在抑制α-葡萄糖苷酶方面的有效性,从而探索它们在治疗糖尿病方面的潜力。
Phytobioinformatics screening of ayurvedic plants for potential α-glucosidase inhibitors in diabetes management
The enzyme α-glucosidase in the small intestine regulates blood glucose levels and stimulates the hydrolysis of oligosaccharides and polysaccharides, increasing glucose levels in the body. Inhibiting this enzyme slows glucose digestion and absorption and as a result post-prandial blood glucose levels remain low, causing decreased insulin demand. Here, we investigated the ayurvedic antidiabetic plants and virtually screened an in-house library of 478 phytochemicals of these plants against the human α-glucosidase. We identified 11 secondary metabolites, including palmitic acid α-monoglyceride, (+)-(2 R)-6-propionyloxyethyl-4′,5,7-trihydroxyisoflavanone, Abruquinone E, and Aurantiamide Acetate, among others, showed stronger interactions with the receptor than the native ligand N-acetyl cysteine. Surprisingly, except one, all of these metabolites were from Abrus precatorius L. [Fabaceae] affirming its ethnopharmacological use against diabetes. The stability of the interactions between the ligands and receptor protein was evaluated through Molecular Dynamic (MD) simulation trajectories including root mean square deviation (RMSD), root mean square fluctuation (RMSF), radius of gyration (Rg), H bonds, β-factor analysis, and binding energy calculation through MM/GBSA method. The efficacy of top metabolites in inhibiting α-glucosidase is depicted in pharmacophore analysis. A comprehensive pharmacokinetics analysis confirmed the druggability, safety, and efficiency of top drug candidates. Additionally, we predicted the interactions of these top metabolites within the biological system. The medicinal properties described in this study will help develop active drug candidates for therapeutic purposes. Further experiments are recommended to prove the effectiveness of these metabolites in inhibiting the α-glucosidase enzyme for exploring their potential in the treatment of diabetes.
期刊介绍:
Current Plant Biology aims to acknowledge and encourage interdisciplinary research in fundamental plant sciences with scope to address crop improvement, biodiversity, nutrition and human health. It publishes review articles, original research papers, method papers and short articles in plant research fields, such as systems biology, cell biology, genetics, epigenetics, mathematical modeling, signal transduction, plant-microbe interactions, synthetic biology, developmental biology, biochemistry, molecular biology, physiology, biotechnologies, bioinformatics and plant genomic resources.