预测β-GAL基因在非生物胁迫下对蚕豆的作用及β-GAL基因家族成员的全基因组特征。

IF 2.5 3区 生物学 Q3 CELL BIOLOGY
Azize Buttanri, Ayşe Gül Kasapoğlu, Burak Muhammed Öner, Ahmed Sidar Aygören, Selman Muslu, Emre İlhan, Ertan Yildirim, Murat Aydin
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引用次数: 0

摘要

Β-Gal是糖苷水解酶(GH)家族的一个亚群,具有Glyco_hydro_35(GH35)结构域。虽然已对许多植物物种的 β-Gal 基因家族进行了研究,但尚未对豆类进行过此类研究。本研究的目的是利用实时定量聚合酶链式反应(qRT-PCR)测定盐胁迫和干旱胁迫下豆角叶组织中β-Gal基因的基因表达水平,并利用生物信息学工具对β-Gal基因家族成员进行全面分析。在蚕豆基因组中鉴定了 25 个 Pvul-βGAL 蛋白,其氨基酸数从 291 到 1119 不等,分子量从 32.94 到 126.56 kDa 不等,等电点从 5.46 到 9.08 不等。蚕豆基因组中的β-Gal基因发生了片段复制和串联复制,Pvul-BGAL基因在进化过程中受到了负选择。为了更深入地理解Pvul-BGAL基因在进化过程中的亲缘关系,研究人员绘制了拟南芥和大豆β-Gal基因的系统发生树和系统图。对β-Gal基因在豆类不同组织中的表达谱进行了硅学测定。此外,还分析了干旱和盐胁迫下蚕豆叶片中β-Gal基因的表达谱,并估计了β-Gal基因在盐胁迫和干旱胁迫中的作用。该研究首次确定了β-Gal基因家族在非生物胁迫响应中的作用以及豆类中β-Gal基因的特征,为今后的功能基因组学研究奠定了基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Predicting the role of β-GAL genes in bean under abiotic stress and genome-wide characterization of β-GAL gene family members.

Β-Gals are a subgroup of the glycoside hydrolase (GH) family of enzymes, which possess the Glyco_hydro_35 (GH35) domain. Although studies have been conducted on the β-Gal gene family in numerous plant species, no such research has been conducted on beans. The purpose of this study was to determine the gene expression levels of β-Gal genes in the leaf tissue of P. vulgaris under salt and drought stress using quantitative real-time polymerase chain reaction (qRT-PCR) and to perform a comprehensive analysis of β-Gal gene family members using bioinformatics tools. In the bean genome, 25 Pvul-βGAL proteins with amino acid numbers ranging from 291 to 1119, molecular weights from 32.94 to 126.56 kDa, and isoelectric points from 5.46 to 9.08 were identified. Both segmental and tandem duplication have occurred in β-Gal genes in the bean genome, and Pvul-BGAL genes have been subject to negative selection in the evolutionary process. For a deeper comprehension of the evolutionary proximity of Pvul-BGAL genes, a phylogenetic tree and synteny map were drawn together with Arabidopsis thaliana and Glycine max β-Gal genes. The expression profiles of β-Gal genes in different tissues of the bean were determined in silico. In addition, the expression profiles of β-Gal genes in the leaves of bean plants subjected to drought and salt stress were analyzed, and the role of β-Gal genes in salt and drought stress was estimated. In this study, the role of β-Gal gene family in abiotic stress response and the characterization of β-Gal genes in beans were determined for the first time and will provide a basis for future functional genomics studies.

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来源期刊
Protoplasma
Protoplasma 生物-细胞生物学
CiteScore
6.60
自引率
6.90%
发文量
99
审稿时长
4-8 weeks
期刊介绍: Protoplasma publishes original papers, short communications and review articles which are of interest to cell biology in all its scientific and applied aspects. We seek contributions dealing with plants and animals but also prokaryotes, protists and fungi, from the following fields: cell biology of both single and multicellular organisms molecular cytology the cell cycle membrane biology including biogenesis, dynamics, energetics and electrophysiology inter- and intracellular transport the cytoskeleton organelles experimental and quantitative ultrastructure cyto- and histochemistry Further, conceptual contributions such as new models or discoveries at the cutting edge of cell biology research will be published under the headings "New Ideas in Cell Biology".
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