Ricardo A R Machado, Antoinette P Malan, Joaquín Abolafia, Jaspher Ewany, Aashaq Hussain Bhat, S Patricia Stock
{"title":"Photorhabdus viridis sp.","authors":"Ricardo A R Machado, Antoinette P Malan, Joaquín Abolafia, Jaspher Ewany, Aashaq Hussain Bhat, S Patricia Stock","doi":"10.1007/s00284-024-03935-y","DOIUrl":null,"url":null,"abstract":"<p><p>A novel bacterial species, Photorhabdus viridis sp. nov., represented by strain Green<sup>T</sup>, isolated from Heterorhabditis zealandica MJ2C entomopathogenic nematodes, is described. Phylogenetic reconstructions using 16S rRNA gene sequences show that strain Green<sup>T</sup> is closely related to P. thracensis DSM 15199<sup> T</sup>. The 16rRNA gene sequences of these two strains are 98.8% identical. Phylogenetic reconstructions using whole-genome sequences show that strain Green<sup>T</sup> is closely related to P. tasmaniensis DSM 22387<sup> T</sup>, P. thracensis DSM 15199<sup> T</sup>, and P. temperata DSM 14550<sup> T</sup>. Digital DNA-DNA hybridization (dDDH) values between strain Green<sup>T</sup> and its three more close relative species, P. tasmaniensis DSM 22387<sup> T</sup>, P. thracensis DSM 15199<sup> T</sup>, and P. temperata DSM 14550<sup> T</sup>, are 49%, 59%, and 59%, respectively. In addition, average nucleotide identity (ANI) values between Green<sup>T</sup> and P. tasmaniensis DSM 22387<sup> T</sup>, P. thracensis DSM 15199<sup> T</sup>, and P. temperata DSM 14550<sup> T</sup> are 92.4%, 94.4%, and 94.6%, respectively. The novel species also differs in their biochemical capacities from the biochemical capacities of their more closely related taxa. The following biochemical tests may be particularly useful in this context: Arginine dihydrolase, gelatinase, and glucose and mannitol oxidation. Given the clear phylogenetic separation, the sequence divergence values, and the phenotypic differences, we conclude that strain Green<sup>T</sup> represents a novel bacterial species, for which we propose the name Photorhabdus viridis sp. nov. with Green<sup>T</sup> (= CCM 9407<sup> T</sup> = CCOS 2117<sup> T</sup> = MJ2C<sup>T</sup>) as the type strain. Our study contributes to a better understanding of the taxonomy and biodiversity of an important bacterial group with great biotechnological and agricultural potential.</p>","PeriodicalId":11360,"journal":{"name":"Current Microbiology","volume":"81 12","pages":"423"},"PeriodicalIF":2.3000,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11499390/pdf/","citationCount":"0","resultStr":"{\"title\":\"Photorhabdus viridis sp. nov. Isolated from Heterorhabditis zealandica Entomopathogenic Nematodes.\",\"authors\":\"Ricardo A R Machado, Antoinette P Malan, Joaquín Abolafia, Jaspher Ewany, Aashaq Hussain Bhat, S Patricia Stock\",\"doi\":\"10.1007/s00284-024-03935-y\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>A novel bacterial species, Photorhabdus viridis sp. nov., represented by strain Green<sup>T</sup>, isolated from Heterorhabditis zealandica MJ2C entomopathogenic nematodes, is described. Phylogenetic reconstructions using 16S rRNA gene sequences show that strain Green<sup>T</sup> is closely related to P. thracensis DSM 15199<sup> T</sup>. The 16rRNA gene sequences of these two strains are 98.8% identical. Phylogenetic reconstructions using whole-genome sequences show that strain Green<sup>T</sup> is closely related to P. tasmaniensis DSM 22387<sup> T</sup>, P. thracensis DSM 15199<sup> T</sup>, and P. temperata DSM 14550<sup> T</sup>. Digital DNA-DNA hybridization (dDDH) values between strain Green<sup>T</sup> and its three more close relative species, P. tasmaniensis DSM 22387<sup> T</sup>, P. thracensis DSM 15199<sup> T</sup>, and P. temperata DSM 14550<sup> T</sup>, are 49%, 59%, and 59%, respectively. In addition, average nucleotide identity (ANI) values between Green<sup>T</sup> and P. tasmaniensis DSM 22387<sup> T</sup>, P. thracensis DSM 15199<sup> T</sup>, and P. temperata DSM 14550<sup> T</sup> are 92.4%, 94.4%, and 94.6%, respectively. The novel species also differs in their biochemical capacities from the biochemical capacities of their more closely related taxa. The following biochemical tests may be particularly useful in this context: Arginine dihydrolase, gelatinase, and glucose and mannitol oxidation. Given the clear phylogenetic separation, the sequence divergence values, and the phenotypic differences, we conclude that strain Green<sup>T</sup> represents a novel bacterial species, for which we propose the name Photorhabdus viridis sp. nov. with Green<sup>T</sup> (= CCM 9407<sup> T</sup> = CCOS 2117<sup> T</sup> = MJ2C<sup>T</sup>) as the type strain. 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引用次数: 0
摘要
本文描述了一个新的细菌物种Photorhabdus viridis sp.利用 16S rRNA 基因序列进行的系统发育重建表明,菌株 GreenT 与 P. thracensis DSM 15199 T 关系密切。利用全基因组序列进行的系统发育重建表明,菌株 GreenT 与塔斯马尼亚蝇(P. tasmaniensis DSM 22387 T)、沙蝇(P. thracensis DSM 15199 T)和温带蝇(P. temperata DSM 14550 T)密切相关。菌株 GreenT 与其三个更近亲的物种 P. tasmaniensis DSM 22387 T、P. thracensis DSM 15199 T 和 P. temperata DSM 14550 T 之间的数字 DNA-DNA 杂交(dDDH)值分别为 49%、59% 和 59%。此外,GreenT 与 P. tasmaniensis DSM 22387 T、P. thracensis DSM 15199 T 和 P. temperata DSM 14550 T 之间的平均核苷酸同一性(ANI)值分别为 92.4%、94.4% 和 94.6%。这些新物种的生化能力也不同于与其亲缘关系较近的类群。在这种情况下,以下生化测试可能特别有用:精氨酸二水解酶、明胶酶以及葡萄糖和甘露醇氧化。鉴于明显的系统发育分离、序列分歧值和表型差异,我们认为菌株 GreenT 代表了一个新的细菌物种,我们将其命名为 Photorhabdus viridis sp.我们的研究有助于更好地了解一个具有巨大生物技术和农业潜力的重要细菌群的分类和生物多样性。
Photorhabdus viridis sp. nov. Isolated from Heterorhabditis zealandica Entomopathogenic Nematodes.
A novel bacterial species, Photorhabdus viridis sp. nov., represented by strain GreenT, isolated from Heterorhabditis zealandica MJ2C entomopathogenic nematodes, is described. Phylogenetic reconstructions using 16S rRNA gene sequences show that strain GreenT is closely related to P. thracensis DSM 15199 T. The 16rRNA gene sequences of these two strains are 98.8% identical. Phylogenetic reconstructions using whole-genome sequences show that strain GreenT is closely related to P. tasmaniensis DSM 22387 T, P. thracensis DSM 15199 T, and P. temperata DSM 14550 T. Digital DNA-DNA hybridization (dDDH) values between strain GreenT and its three more close relative species, P. tasmaniensis DSM 22387 T, P. thracensis DSM 15199 T, and P. temperata DSM 14550 T, are 49%, 59%, and 59%, respectively. In addition, average nucleotide identity (ANI) values between GreenT and P. tasmaniensis DSM 22387 T, P. thracensis DSM 15199 T, and P. temperata DSM 14550 T are 92.4%, 94.4%, and 94.6%, respectively. The novel species also differs in their biochemical capacities from the biochemical capacities of their more closely related taxa. The following biochemical tests may be particularly useful in this context: Arginine dihydrolase, gelatinase, and glucose and mannitol oxidation. Given the clear phylogenetic separation, the sequence divergence values, and the phenotypic differences, we conclude that strain GreenT represents a novel bacterial species, for which we propose the name Photorhabdus viridis sp. nov. with GreenT (= CCM 9407 T = CCOS 2117 T = MJ2CT) as the type strain. Our study contributes to a better understanding of the taxonomy and biodiversity of an important bacterial group with great biotechnological and agricultural potential.
期刊介绍:
Current Microbiology is a well-established journal that publishes articles in all aspects of microbial cells and the interactions between the microorganisms, their hosts and the environment.
Current Microbiology publishes original research articles, short communications, reviews and letters to the editor, spanning the following areas:
physiology, biochemistry, genetics, genomics, biotechnology, ecology, evolution, morphology, taxonomy, diagnostic methods, medical and clinical microbiology and immunology as applied to microorganisms.