基于孟德尔随机化和转录组数据分析,揭示银屑病和 IgA 肾病之间的遗传联系和发病机制。

IF 1.8 4区 医学 Q3 DERMATOLOGY
Yingwen Chen, Min Huang, Ziqing You, Rule Sa, Lu Zhao, Congwen Ku, Wenying Wang, Xingwu Duan
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引用次数: 0

摘要

据报道,许多银屑病患者被诊断为继发性 IgA 肾病(IgAN)。然而,银屑病与 IgAN 之间的关联机制尚未得到很好的阐明。银屑病与 IgAN 之间的联系值得深入探讨。我们将采用孟德尔随机化(MR)分析来探讨 IgAN 与银屑病、寻常型银屑病、其他和不明银屑病、鳞屑型银屑病和关节病型银屑病之间的因果关系。我们根据基因表达总库数据库进行了转录组分析。我们通过差异表达基因分析和权重基因共表达网络分析确定了串联基因。对这些串联基因进行了功能注释。随后,我们建立了蛋白质-蛋白质相互作用网络,并利用 MCODE 和 CytoHubba 插件应用程序发现了候选基因。最后,我们通过创建接收者操作特征曲线来检验这些基因的预测功效。磁共振分析表明,寻常型银屑病患者患 IgAN 的风险较高。[OR = 1.040,95%CI (1.005,1.076),P = 0.026
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Unveiling the genetic link and pathogenesis between psoriasis and IgA nephropathy based on Mendelian randomization and transcriptome data analyses

It has been reported that many people with psoriasis have been diagnosed with secondary IgA nephropathy (IgAN). However, the mechanisms behind the association between psoriasis and IgAN have not been well clarified. The connection between psoriasis and IgAN deserves deeper exploration. Mendelian randomization (MR) analysis would be employed to explore the link of causality between IgAN and psoriasis, psoriasis vulgaris, other and unspecified psoriasis, guttate psoriasis, and arthropathic psoriasis. Transcriptomic analyses were carried out against the Gene Expression Omnibus databases. We identified crosstalk genes through the analysis of Differentially expressed genes and weight gene co-expression network analysis. Functional annotations were enriched for these crosstalk genes. Subsequently, we established a protein-protein interaction network, and candidate genes would be discovered through the utilization of the MCODE and CytoHubba plug-in applications. Lastly, the predictive efficacy of these genes was examined via creating receiver operating characteristic curves. The MR analysis suggested that psoriasis vulgaris patients were at a higher risk for IgAN. [OR = 1.040, 95%CI (1.005,1.076), p = 0.026 < 0.05]. Additionally, arthropathic psoriasis may augment the incidence of IgAN [OR = 1.081, 95%CI (1.040–1.124), p < 0.01] in the European population. Through the analysis of DEGs and WGCNA, we identified 12 significant genes (NETO2, RRM2, SLAMF7, GBP1, KIF20A, CCL4, MMP1, IL1β, NDC80, CXCL9, C15orf48, GSTA3), which may be potential crosstalk genes between the two diseases. Then, the functional annotation results indicated that the crosstalk genes seemed primarily involved in immune and inflammatory responses. By establishing the PPI network, we further discovered that CXCL9, IL1β, CCL4, and MMP1 play a vital part in psoriasis and IgAN, and all have good diagnostic values. Our MR analysis provided evidence that genetic vulnerability to IgAN may be associated with an elevated risk of psoriasis vulgaris and arthropathic psoriasis respectively among Europeans. Doctors should be aware of these associations when patients with psoriasis present with renal dysfunction, especially those with psoriasis vulgaris and arthropathic psoriasis. Chronic inflammation, drug effects, and immunity may contribute to the generation and development of both diseases. IL1β, CXCL9, CCL4, and MMP1 may be core biomarkers for psoriasis and IgAN.

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来源期刊
CiteScore
4.10
自引率
3.30%
发文量
30
审稿时长
4-8 weeks
期刊介绍: Archives of Dermatological Research is a highly rated international journal that publishes original contributions in the field of experimental dermatology, including papers on biochemistry, morphology and immunology of the skin. The journal is among the few not related to dermatological associations or belonging to respective societies which guarantees complete independence. This English-language journal also offers a platform for review articles in areas of interest for dermatologists and for publication of innovative clinical trials.
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