{"title":"采用单细胞 RNA 测序和一系列生物信息学方法,确定骨质疏松症和肥胖之间的共同遗传特征。","authors":"Dingzhuo Liu, Fangming Cao, Dian Liu, Hao Li, Lin Tao, Yue Zhu","doi":"10.1302/2046-3758.1310.BJR-2023-0366.R1","DOIUrl":null,"url":null,"abstract":"<p><strong>Aims: </strong>This study examined the relationship between obesity (OB) and osteoporosis (OP), aiming to identify shared genetic markers and molecular mechanisms to facilitate the development of therapies that target both conditions simultaneously.</p><p><strong>Methods: </strong>Using weighted gene co-expression network analysis (WGCNA), we analyzed datasets from the Gene Expression Omnibus (GEO) database to identify co-expressed gene modules in OB and OP. These modules underwent Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and protein-protein interaction analysis to discover Hub genes. Machine learning refined the gene selection, with further validation using additional datasets. Single-cell analysis emphasized specific cell subpopulations, and enzyme-linked immunosorbent assay (ELISA), protein blotting, and cellular staining were used to investigate key genes.</p><p><strong>Results: </strong>WGCNA revealed critical gene modules for OB and OP, identifying the <i>Toll-like receptor</i> (<i>TLR</i>) signalling pathway as a common factor. <i>TLR2</i> was the most significant gene, with a pronounced expression in macrophages. Elevated TLR2 expression correlated with increased adipose accumulation, inflammation, and osteoclast differentiation, linking it to OP development.</p><p><strong>Conclusion: </strong>Our study underscores the pivotal role of <i>TLR2</i> in connecting OP and OB. It highlights the influence of <i>TLR2</i> in macrophages, driving both diseases through a pro-inflammatory mechanism. These insights propose <i>TLR2</i> as a potential dual therapeutic target for treating OP and OB.</p>","PeriodicalId":9074,"journal":{"name":"Bone & Joint Research","volume":"13 10","pages":"573-587"},"PeriodicalIF":4.7000,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482281/pdf/","citationCount":"0","resultStr":"{\"title\":\"Employing single-cell RNA sequencing coupled with an array of bioinformatics approaches to ascertain the shared genetic characteristics between osteoporosis and obesity.\",\"authors\":\"Dingzhuo Liu, Fangming Cao, Dian Liu, Hao Li, Lin Tao, Yue Zhu\",\"doi\":\"10.1302/2046-3758.1310.BJR-2023-0366.R1\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Aims: </strong>This study examined the relationship between obesity (OB) and osteoporosis (OP), aiming to identify shared genetic markers and molecular mechanisms to facilitate the development of therapies that target both conditions simultaneously.</p><p><strong>Methods: </strong>Using weighted gene co-expression network analysis (WGCNA), we analyzed datasets from the Gene Expression Omnibus (GEO) database to identify co-expressed gene modules in OB and OP. These modules underwent Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and protein-protein interaction analysis to discover Hub genes. Machine learning refined the gene selection, with further validation using additional datasets. Single-cell analysis emphasized specific cell subpopulations, and enzyme-linked immunosorbent assay (ELISA), protein blotting, and cellular staining were used to investigate key genes.</p><p><strong>Results: </strong>WGCNA revealed critical gene modules for OB and OP, identifying the <i>Toll-like receptor</i> (<i>TLR</i>) signalling pathway as a common factor. <i>TLR2</i> was the most significant gene, with a pronounced expression in macrophages. Elevated TLR2 expression correlated with increased adipose accumulation, inflammation, and osteoclast differentiation, linking it to OP development.</p><p><strong>Conclusion: </strong>Our study underscores the pivotal role of <i>TLR2</i> in connecting OP and OB. It highlights the influence of <i>TLR2</i> in macrophages, driving both diseases through a pro-inflammatory mechanism. These insights propose <i>TLR2</i> as a potential dual therapeutic target for treating OP and OB.</p>\",\"PeriodicalId\":9074,\"journal\":{\"name\":\"Bone & Joint Research\",\"volume\":\"13 10\",\"pages\":\"573-587\"},\"PeriodicalIF\":4.7000,\"publicationDate\":\"2024-10-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11482281/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bone & Joint Research\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1302/2046-3758.1310.BJR-2023-0366.R1\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CELL & TISSUE ENGINEERING\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bone & Joint Research","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1302/2046-3758.1310.BJR-2023-0366.R1","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CELL & TISSUE ENGINEERING","Score":null,"Total":0}
引用次数: 0
摘要
目的:本研究探讨了肥胖症(OB)和骨质疏松症(OP)之间的关系,旨在确定共同的遗传标记和分子机制,以促进同时针对这两种疾病的疗法的开发:利用加权基因共表达网络分析(WGCNA),我们分析了基因表达总库(GEO)数据库中的数据集,以确定OB和OP中的共表达基因模块。这些模块经过京都基因和基因组百科全书(KEGG)通路富集和蛋白-蛋白相互作用分析,以发现枢纽基因。机器学习改进了基因选择,并使用其他数据集进行了进一步验证。单细胞分析强调了特定的细胞亚群,酶联免疫吸附试验(ELISA)、蛋白质印迹和细胞染色被用来研究关键基因:WGCNA揭示了OB和OP的关键基因模块,发现Toll样受体(TLR)信号通路是一个共同因素。TLR2 是最重要的基因,在巨噬细胞中明显表达。TLR2 表达的升高与脂肪堆积、炎症和破骨细胞分化的增加相关,并将其与 OP 的发展联系起来:我们的研究强调了 TLR2 在连接 OP 和 OB 中的关键作用。结论:我们的研究强调了 TLR2 在连接 OP 和 OB 中的关键作用,它突出了 TLR2 在巨噬细胞中的影响,通过促炎机制驱动这两种疾病。这些见解提出 TLR2 是治疗 OP 和 OB 的潜在双重治疗靶点。
Employing single-cell RNA sequencing coupled with an array of bioinformatics approaches to ascertain the shared genetic characteristics between osteoporosis and obesity.
Aims: This study examined the relationship between obesity (OB) and osteoporosis (OP), aiming to identify shared genetic markers and molecular mechanisms to facilitate the development of therapies that target both conditions simultaneously.
Methods: Using weighted gene co-expression network analysis (WGCNA), we analyzed datasets from the Gene Expression Omnibus (GEO) database to identify co-expressed gene modules in OB and OP. These modules underwent Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and protein-protein interaction analysis to discover Hub genes. Machine learning refined the gene selection, with further validation using additional datasets. Single-cell analysis emphasized specific cell subpopulations, and enzyme-linked immunosorbent assay (ELISA), protein blotting, and cellular staining were used to investigate key genes.
Results: WGCNA revealed critical gene modules for OB and OP, identifying the Toll-like receptor (TLR) signalling pathway as a common factor. TLR2 was the most significant gene, with a pronounced expression in macrophages. Elevated TLR2 expression correlated with increased adipose accumulation, inflammation, and osteoclast differentiation, linking it to OP development.
Conclusion: Our study underscores the pivotal role of TLR2 in connecting OP and OB. It highlights the influence of TLR2 in macrophages, driving both diseases through a pro-inflammatory mechanism. These insights propose TLR2 as a potential dual therapeutic target for treating OP and OB.