NAD(P)H 辅因子中 C-D 振荡斯塔克探针的环境和构象诱导频移。

IF 4.6 2区 化学 Q2 CHEMISTRY, PHYSICAL
Steven D E Fried, Srijit Mukherjee, Yuezhi Mao, Steven G Boxer
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引用次数: 0

摘要

NAD(P)H 辅因子存在于所有生命形式中,是电子和氢原子转移所必需的。基于振动斯塔克效应的碳-氘(C-D)振动的线性响应有助于测量包括辅助因子介导的氢化物转移在内的关键生物反应的电场。我们发现分子间和分子内电场都会影响 NAD(P)H 和烟酰胺类模型中的 C-D 频率,其中反应性 C4 氢已被氚化。因此,C-D 频率可以报告环境静电和烟酰胺环的构象变化。构象依赖效应是通过空间静电效应而不是通过键来介导的。通过实验和计算方法,包括振动溶色法、分子动力学模拟和硅学斯塔克计算,确定了斯塔克调谐率为 ∼0.57 cm-1/(MV/cm) 。结果表明,振动探针的斯塔克调谐率非常稳健,适用于测量酶中氢化物转移反应坐标的场。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Environment- and Conformation-Induced Frequency Shifts of C-D Vibrational Stark Probes in NAD(P)H Cofactors.

Environment- and Conformation-Induced Frequency Shifts of C-D Vibrational Stark Probes in NAD(P)H Cofactors.

NAD(P)H cofactors are found in all forms of life and are essential for electron and hydrogen atom transfer. The linear response of a carbon-deuterium (C-D) vibration based on the vibrational Stark effect can facilitate measurements of electric fields for critical biological reactions including cofactor-mediated hydride transfer. We find both inter- and intramolecular electric fields influence the C-D frequency in NAD(P)H and nicotinamide-like models where the reactive C4-hydrogen has been deuterated. Hence, the C-D frequency can report both environmental electrostatics and conformational changes of the nicotinamide ring. Conformation-dependent effects are mediated through space as electrostatic effects, rather than through-bond. A Stark tuning rate of ∼0.57 cm-1/(MV/cm) was determined using both experimental and computational approaches, including vibrational solvatochromism, molecular dynamics simulations, and in silico Stark calculations. The vibrational probe's Stark tuning rate is shown to be robust and suitable for measuring fields along hydride transfer reaction coordinates in enzymes.

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来源期刊
The Journal of Physical Chemistry Letters
The Journal of Physical Chemistry Letters CHEMISTRY, PHYSICAL-NANOSCIENCE & NANOTECHNOLOGY
CiteScore
9.60
自引率
7.00%
发文量
1519
审稿时长
1.6 months
期刊介绍: The Journal of Physical Chemistry (JPC) Letters is devoted to reporting new and original experimental and theoretical basic research of interest to physical chemists, biophysical chemists, chemical physicists, physicists, material scientists, and engineers. An important criterion for acceptance is that the paper reports a significant scientific advance and/or physical insight such that rapid publication is essential. Two issues of JPC Letters are published each month.
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