Ross‐Lynne A. Gibb, Danielle K. L. Botha, Siddarthan Venkatachalam, Mfundo Bizani, Thomas G. Bornman, Rosemary A. Dorrington
{"title":"DNA 代谢编码揭示了阿古哈斯洋流和邻近沿岸陆架中不同的细菌和浮游植物群落","authors":"Ross‐Lynne A. Gibb, Danielle K. L. Botha, Siddarthan Venkatachalam, Mfundo Bizani, Thomas G. Bornman, Rosemary A. Dorrington","doi":"10.1002/lno.12703","DOIUrl":null,"url":null,"abstract":"The Agulhas Current is a globally important western boundary current that influences numerous processes (e.g., upwelling, biogeochemical fluxes and distribution of marine taxa) in the southwestern Indian Ocean. The oceanographic processes of the Agulhas Current are well understood, but precisely how they influence coastal ecosystem productivity remains to be elucidated. In the present foundational study, we characterized the bacterial (16S rRNA gene) and phytoplankton (chloroplast 16S rRNA, <jats:italic>rbcL</jats:italic>, and eukaryotic 18S rRNA genes) community structures of the Agulhas Current system using a metabarcoding approach. All four markers provided consistent data on the bacterial and phytoplankton communities in the Agulhas Current and coastal sites. The study revealed distinct, conserved communities and similar patterns of dominance by taxa adapted to oligotrophic conditions within the Agulhas Current, sampled 2 yr apart. By contrast, there was significant variability in taxonomic diversity and abundance of phytoplankton communities in the adjacent coastal waters that could be linked to localized upwelling. While the Agulhas Current bacterial and phytoplankton communities were diverse and represented many functional groups, the coastal sites were more diatom‐dominated and included genera typically associated with upwelling, for example, <jats:italic>Thalassiosira</jats:italic> spp. Based on their relative abundance profiles, phytoplankton communities were more responsive to environmental variability than bacteria and may therefore prove more useful in linking ecosystem dynamics to environmental variability in marine systems.","PeriodicalId":18143,"journal":{"name":"Limnology and Oceanography","volume":null,"pages":null},"PeriodicalIF":3.8000,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"DNA metabarcoding reveals distinct bacterial and phytoplankton assemblages in the Agulhas Current and the adjacent coastal shelf\",\"authors\":\"Ross‐Lynne A. Gibb, Danielle K. 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The study revealed distinct, conserved communities and similar patterns of dominance by taxa adapted to oligotrophic conditions within the Agulhas Current, sampled 2 yr apart. By contrast, there was significant variability in taxonomic diversity and abundance of phytoplankton communities in the adjacent coastal waters that could be linked to localized upwelling. 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DNA metabarcoding reveals distinct bacterial and phytoplankton assemblages in the Agulhas Current and the adjacent coastal shelf
The Agulhas Current is a globally important western boundary current that influences numerous processes (e.g., upwelling, biogeochemical fluxes and distribution of marine taxa) in the southwestern Indian Ocean. The oceanographic processes of the Agulhas Current are well understood, but precisely how they influence coastal ecosystem productivity remains to be elucidated. In the present foundational study, we characterized the bacterial (16S rRNA gene) and phytoplankton (chloroplast 16S rRNA, rbcL, and eukaryotic 18S rRNA genes) community structures of the Agulhas Current system using a metabarcoding approach. All four markers provided consistent data on the bacterial and phytoplankton communities in the Agulhas Current and coastal sites. The study revealed distinct, conserved communities and similar patterns of dominance by taxa adapted to oligotrophic conditions within the Agulhas Current, sampled 2 yr apart. By contrast, there was significant variability in taxonomic diversity and abundance of phytoplankton communities in the adjacent coastal waters that could be linked to localized upwelling. While the Agulhas Current bacterial and phytoplankton communities were diverse and represented many functional groups, the coastal sites were more diatom‐dominated and included genera typically associated with upwelling, for example, Thalassiosira spp. Based on their relative abundance profiles, phytoplankton communities were more responsive to environmental variability than bacteria and may therefore prove more useful in linking ecosystem dynamics to environmental variability in marine systems.
期刊介绍:
Limnology and Oceanography (L&O; print ISSN 0024-3590, online ISSN 1939-5590) publishes original articles, including scholarly reviews, about all aspects of limnology and oceanography. The journal''s unifying theme is the understanding of aquatic systems. Submissions are judged on the originality of their data, interpretations, and ideas, and on the degree to which they can be generalized beyond the particular aquatic system examined. Laboratory and modeling studies must demonstrate relevance to field environments; typically this means that they are bolstered by substantial "real-world" data. Few purely theoretical or purely empirical papers are accepted for review.