基于线粒体 DNA 序列鉴定沙特阿拉伯王国利雅得省的两个地下白蚁物种。

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Rasool Khawaja Ghulam, Mureed Husain, Mostafa Rezk Sharaf, Muhammad Tufail, Koko Dwi Sutanto, Waleed Saleh Alwaneen, Abdulrahman Saad Aldawood
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引用次数: 0

摘要

白蚁是具有重要经济价值的木材破坏性害虫和农业害虫。白蚁动物群几乎包括全世界 286 个属 2900 个已描述的物种。本研究从利雅得省的 42 个不同地点收集了数百个白蚁样本。以前曾对这些样本进行过形态鉴定,并报告了犀白蚁科的两个地下白蚁物种:Coptotermes heimi 和 Psammotermes hypostoma。本研究利用线粒体细胞色素 c 氧化酶亚单位 1 基因的 DNA 条形码对这些样本进行了分析,以便在分子基础上确认传统的分类鉴定。所有 42 个白蚁标本的 COI 基因序列都已提交到 GenBank(登录号:ON529959-ON529959-ON529959):ON529959-ON529969、OP825131-OP825132 和 OP890882-OP890910)。因此,42 个样本中有 11 个被鉴定为 C. heimi,其余 31 个样本被鉴定为 P. hypostoma,并进行了系统进化分析。所有 11 个 C. heimi 序列都被归入一个支系,表明其亲缘关系密切。而 31 个 P. hypostoma 序列在系统发生树中构成了两个支系。成对核苷酸序列同一性和差异分析表明,C. heimi序列的核苷酸同一性高达87.6%-99.5%,差异较小,在0.5%-13.6%之间。同样,P. hypostoma 的序列也显示出较高的核苷酸同一性(78.6%-100%)和较低的差异(0%-10.7%)。会上还讨论了基于 COI 的 DNA 条形码的进一步应用、意义和不足之处。使用 COI 基因进行 DNA 条形编码是区分 C. heimi 和 P. hypostoma 基因型的可靠工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Mitochondrial DNA sequence-based identification of two subterranean termite species, from Riyadh Province, Kingdom of Saudi Arabia.

Termites are economically important wood-destroying and agricultural pests. The termite fauna almost consists of 2900 described species in 286 genera worldwide. In the present study, hundreds of termite samples from 42 different locations in the Riyadh province were collected. These samples were previously used for morphometric identification and reported two subterranean termite species, Coptotermes heimi and Psammotermes hypostoma, in the family Rhinotermitidae. In the present study, these samples were analysed using DNA barcoding with the mitochondrial cytochrome c oxidase subunit 1 gene to confirm the conventional taxonomical identification on a molecular basis. The obtained COI gene sequences of all 42 termite specimens were submitted to GenBank (accession numbers: ON529959-ON529969, OP825131-OP825132, and OP890882-OP890910). Eleven of the 42 samples were thus identified as C. heimi and the remaining 31 samples as P. hypostoma, which were phylogenetically analysed. All the 11 C. heimi sequences were grouped in a single clade, indicating close relatedness. While 31 sequences of P. hypostoma constituted two clades in the phylogenetic tree. Pairwise nucleotide sequence identity and divergence analysis showed that C. heimi sequences showed high nucleotide identities of 87.6-99.5% and less divergence ranging from 0.5% to 13.6%. Similarly, sequences of P. hypostoma also showed high nucleotide identity of 78.6-100% and low divergence among them ranging from 0-10.7%. A further application, significance, and shortcomings of COI-based DNA barcoding have been discussed. DNA barcoding using the COI gene is a reliable tool to distinguish C. heimi and P. hypostoma genotypes.

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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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